Behnam Javidfar
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Explore the profile of Behnam Javidfar including associated specialties, affiliations and a list of published articles.
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19
Citations
479
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Recent Articles
1.
Blaze J, Evans V, Feria Pliego J, Unichenko P, Javidfar B, Heissel S, et al.
Biol Psychiatry Glob Open Sci
. 2025 Feb;
5(2):100432.
PMID: 39911537
Background: The presence of treatment resistance in neuropsychiatric disease suggests that novel mechanism-based discoveries and therapies could benefit the field, with a viable candidate being transfer RNA (tRNA) epitranscriptomics. tRNA...
2.
Peter C, Agarwal A, Watanabe R, Kassim B, Wang X, Lambert T, et al.
Cell Rep Methods
. 2024 Dec;
4(12):100911.
PMID: 39631398
We apply a single-molecule chromatin fiber sequencing (Fiber-seq) protocol designed for amplification-free cell-type-specific mapping of the regulatory architecture at nucleosome resolution along extended ∼10-kb chromatin fibers to neuronal and non-neuronal...
3.
Blaze J, Browne C, Futamura R, Javidfar B, Zachariou V, Nestler E, et al.
Neuropsychopharmacology
. 2024 Feb;
49(8):1276-1284.
PMID: 38332016
DNA cytosine methylation has been documented as a potential epigenetic mechanism of transcriptional regulation underlying opioid use disorder. However, methylation of RNA cytosine residues, which would drive another level of...
4.
Min A, Javidfar B, Missall R, Doanman D, Durens M, Graziani M, et al.
J Virol
. 2023 Nov;
97(12):e0159523.
PMID: 38032195
Our mouse model is a powerful tool for investigating the genetic mechanisms governing central nervous system (CNS) human immunodeficiency virus type-1 (HIV-1) infection and latency in the CNS at a...
5.
LaMarca E, Saito A, Plaza-Jennings A, Espeso-Gil S, Hellmich A, Fernando M, et al.
bioRxiv
. 2023 Jul;
PMID: 37503149
Here, we construct genome-scale maps for R-loops, three-stranded nucleic acid structures comprised of a DNA/RNA hybrid and a displaced single strand of DNA, in the proliferative and differentiated zones of...
6.
Min A, Javidfar B, Missall R, Doanman D, Durens M, Vil S, et al.
bioRxiv
. 2023 May;
PMID: 37162838
The central nervous system (CNS) is a major human immunodeficiency virus type 1 reservoir. Microglia are the primary target cell of HIV-1 infection in the CNS. Current models have not...
7.
Plaza-Jennings A, Valada A, OShea C, Iskhakova M, Hu B, Javidfar B, et al.
Mol Cell
. 2022 Dec;
82(24):4647-4663.e8.
PMID: 36525955
To explore genome organization and function in the HIV-infected brain, we applied single-nuclei transcriptomics, cell-type-specific chromosomal conformation mapping, and viral integration site sequencing (IS-seq) to frontal cortex from individuals with...
8.
Zajicek A, Ruan H, Dai H, Skolfield M, Phillips H, Burnette W, et al.
Mol Psychiatry
. 2022 Apr;
27(5):2414-2424.
PMID: 35449295
The lysine-63 deubiquitinase cylindromatosis (CYLD) is long recognized as a tumor suppressor in immunity and inflammation, and its loss-of-function mutations lead to familial cylindromatosis. However, recent studies reveal that CYLD...
9.
Rapanelli M, Williams J, Ma K, Yang F, Zhong P, Patel R, et al.
Mol Psychiatry
. 2022 Mar;
27(8):3355-3366.
PMID: 35296809
Large-scale genetic studies have revealed that the most prominent genes disrupted in autism are chromatin regulators mediating histone methylation/demethylation, suggesting the central role of epigenetic dysfunction in this disorder. Here,...
10.
Neuron-specific chromosomal megadomain organization is adaptive to recent retrotransposon expansions
Chandrasekaran S, Espeso-Gil S, Loh Y, Javidfar B, Kassim B, Zhu Y, et al.
Nat Commun
. 2021 Dec;
12(1):7243.
PMID: 34903713
Regulatory mechanisms associated with repeat-rich sequences and chromosomal conformations in mature neurons remain unexplored. Here, we map cell-type specific chromatin domain organization in adult mouse cerebral cortex and report strong...