Andrey Karshikoff
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Explore the profile of Andrey Karshikoff including associated specialties, affiliations and a list of published articles.
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Recent Articles
1.
Hartono Y, Xu Y, Karshikoff A, Nilsson L, Villa A
J Chem Inf Model
. 2018 Mar;
58(4):773-783.
PMID: 29537270
The protonation states for nucleic acid bases are difficult to assess experimentally. In the context of DNA triplex, the protonation state of cytidine in the third strand is particularly important,...
2.
Karshikoff A, Nilsson L, Ladenstein R
FEBS J
. 2015 Jun;
282(20):3899-917.
PMID: 26074325
The role of fluctuations in protein thermostability has recently received considerable attention. In the current literature a dualistic picture can be found: thermostability seems to be associated with enhanced rigidity...
3.
Karshikoff A, Nilsson L, Foloppe N
Biochemistry
. 2013 Jul;
52(34):5730-45.
PMID: 23879632
E. coli DsbA is an intensively studied enzyme of the thioredoxin superfamily of thiol-disulfide oxidoreductases. DsbA catalyzes the disulfide bond formation and folding of proteins in the bacterial periplasm. DsbA...
4.
Wuxiuer Y, Morgunova E, Cols N, Popov A, Karshikoff A, Sylte I, et al.
FEBS J
. 2012 Jun;
279(16):2940-56.
PMID: 22741949
All drosophilid alcohol dehydrogenases contain an eight-member water chain connecting the active site with the solvent at the dimer interface. A similar water chain has also been shown to exist...
5.
Nilsson L, Karshikoff A
PLoS One
. 2011 Jun;
6(5):e20116.
PMID: 21647418
Ionisation equilibria in proteins are influenced by conformational flexibility, which can in principle be accounted for by molecular dynamics simulation. One problem in this method is the bias arising from...
6.
Moutsatsou P, Papoutsi Z, Kassi E, Heldring N, Zhao C, Tsiapara A, et al.
PLoS One
. 2011 Jan;
5(12):e15594.
PMID: 21203528
Royal jelly (RJ) excreted by honeybees and used as a nutritional and medicinal agent has estrogen-like effects, yet the compounds mediating these effects remain unidentified. The possible effects of three...
7.
Jelesarov I, Karshikoff A
Methods Mol Biol
. 2009 Jan;
490:227-60.
PMID: 19157086
Although the energetic balance of forces stabilizing proteins has been established qualitatively over the last decades, quantification of the energetic contribution of particular interactions still poses serious problems. The reasons...
8.
Bjelic S, Wieninger S, Jelesarov I, Karshikoff A
Proteins
. 2007 Aug;
70(3):810-22.
PMID: 17729276
The protein moiety of the Braun's E. coli outer membrane lipoprotein (Lpp-56) is an attractive object of biophysical investigation in several aspects. It is a homotrimeric, parallel coiled coil, a...
9.
Bjelic S, Karshikoff A, Jelesarov I
Biochemistry
. 2006 Jul;
45(29):8931-9.
PMID: 16846236
The 56 amino acid long protein moiety of the E. coli outer membrane lipoprotein (Lpp-56) contains a 4,3 hydrophobic heptad repeat and forms a parallel, in-register trimeric coiled coil in...
10.
Kundrotas P, Karshikoff A
Biochim Biophys Acta
. 2004 Sep;
1702(1):1-8.
PMID: 15450845
Unfolded proteins recently attracted attention due to accumulation of experimental evidences for their significant role in different life processes. Modeling of electrostatic interactions (EI) in unfolded state of proteins is...