Andreas Weidemann
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Explore the profile of Andreas Weidemann including associated specialties, affiliations and a list of published articles.
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Citations
560
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Recent Articles
1.
Dudas D, Wittig U, Rey M, Weidemann A, Muller W
Database (Oxford)
. 2023 Apr;
2023.
PMID: 37002681
SABIO-RK is a database for biochemical reactions and their kinetics. Data in SABIO-RK are inherently multidimensional and complex. The complex relationships between the data are often difficult to follow or...
2.
Lauterbach S, Dienhart H, Range J, Malzacher S, Sporing J, Rother D, et al.
Nat Methods
. 2023 Feb;
20(3):400-402.
PMID: 36759590
The design of biocatalytic reaction systems is highly complex owing to the dependency of the estimated kinetic parameters on the enzyme, the reaction conditions, and the modeling method. Consequently, reproducibility...
3.
Range J, Halupczok C, Lohmann J, Swainston N, Kettner C, Bergmann F, et al.
FEBS J
. 2021 Dec;
289(19):5864-5874.
PMID: 34890097
EnzymeML is an XML-based data exchange format that supports the comprehensive documentation of enzymatic data by describing reaction conditions, time courses of substrate and product concentrations, the kinetic model, and...
4.
Mayer G, Muller W, Schork K, Uszkoreit J, Weidemann A, Wittig U, et al.
Brief Bioinform
. 2021 Feb;
22(5).
PMID: 33589928
This article describes some use case studies and self-assessments of FAIR status of de.NBI services to illustrate the challenges and requirements for the definition of the needs of adhering to...
5.
Wittig U, Rey M, Weidemann A, Kania R, Muller W
Nucleic Acids Res
. 2017 Nov;
46(D1):D656-D660.
PMID: 29092055
SABIO-RK (http://sabiork.h-its.org/) is a manually curated database containing data about biochemical reactions and their reaction kinetics. The data are primarily extracted from scientific literature and stored in a relational database....
6.
Wittig U, Rey M, Weidemann A, Muller W
J Biotechnol
. 2017 Jun;
261:229-237.
PMID: 28606610
Collecting, curating, interlinking, and sharing high quality data are central to de.NBI-SysBio, the systems biology data management service center within the de.NBI network (German Network for Bioinformatics Infrastructure). The work...
7.
Wolstencroft K, Owen S, Krebs O, Nguyen Q, Stanford N, Golebiewski M, et al.
BMC Syst Biol
. 2015 Jul;
9:33.
PMID: 26160520
Background: Systems biology research typically involves the integration and analysis of heterogeneous data types in order to model and predict biological processes. Researchers therefore require tools and resources to facilitate...
8.
Wittig U, Rey M, Kania R, Bittkowski M, Shi L, Golebiewski M, et al.
FEBS J
. 2013 Oct;
281(2):572-82.
PMID: 24165050
The scientific literature contains a tremendous amount of kinetic data describing the dynamic behaviour of biochemical reactions over time. These data are needed for computational modelling to create models of...
9.
Wittig U, Kania R, Golebiewski M, Rey M, Shi L, Jong L, et al.
Nucleic Acids Res
. 2011 Nov;
40(Database issue):D790-6.
PMID: 22102587
SABIO-RK (http://sabio.h-its.org/) is a web-accessible database storing comprehensive information about biochemical reactions and their kinetic properties. SABIO-RK offers standardized data manually extracted from the literature and data directly submitted from...
10.
Swainston N, Golebiewski M, Messiha H, Malys N, Kania R, Kengne S, et al.
FEBS J
. 2010 Aug;
277(18):3769-79.
PMID: 20738395
A limited number of publicly available resources provide access to enzyme kinetic parameters. These have been compiled through manual data mining of published papers, not from the original, raw experimental...