» Articles » PMID: 9671485

A Potential Role for U2AF-SAP 155 Interactions in Recruiting U2 SnRNP to the Branch Site

Overview
Journal Mol Cell Biol
Specialty Cell Biology
Date 1998 Jul 22
PMID 9671485
Citations 165
Authors
Affiliations
Soon will be listed here.
Abstract

Base pairing between U2 snRNA and the branchpoint sequence (BPS) is essential for pre-mRNA splicing. Because the metazoan BPS is short and highly degenerate, this interaction alone is insufficient for specific binding of U2 snRNP. The splicing factor U2AF binds to the pyrimidine tract at the 3' splice site in the earliest spliceosomal complex, E, and is essential for U2 snRNP binding in the spliceosomal complex A. We show that the U2 snRNP protein SAP 155 UV cross-links to pre-mRNA on both sides of the BPS in the A complex. SAP 155's downstream cross-linking site is immediately adjacent to the U2AF binding site, and the two proteins interact directly in protein-protein interaction assays. Using UV cross-linking, together with functional analyses of pre-mRNAs containing duplicated BPSs, we show a direct correlation between BPS selection and UV cross-linking of SAP 155 on both sides of the BPS. Together, our data are consistent with a model in which U2AF binds to the pyrimidine tract in the E complex and then interacts with SAP 155 to recruit U2 snRNP to the BPS.

Citing Articles

SF3B1: from core splicing factor to oncogenic driver.

Bak-Gordon P, Manley J RNA. 2025; 31(3):314-332.

PMID: 39773890 PMC: 11874996. DOI: 10.1261/rna.080368.124.


Cancer-associated SF3B1 mutation K700E causes widespread changes in U2/branchpoint recognition without altering splicing.

Damianov A, Lin C, Zhang J, Manley J, Black D bioRxiv. 2024; .

PMID: 39605567 PMC: 11601671. DOI: 10.1101/2024.11.18.624191.


Pharmacological Inhibition of the Spliceosome SF3b Complex by Pladienolide-B Elicits Craniofacial Developmental Defects in Mouse and Zebrafish.

Hoshino Y, Liu S, Furutera T, Yamada T, Koyabu D, Nukada Y Birth Defects Res. 2024; 116(11):e2404.

PMID: 39494782 PMC: 11579809. DOI: 10.1002/bdr2.2404.


RNA-Binding Protein-Mediated Alternative Splicing Regulates Abiotic Stress Responses in Plants.

Guo Y, Shang X, Ma L, Cao Y Int J Mol Sci. 2024; 25(19).

PMID: 39408875 PMC: 11477454. DOI: 10.3390/ijms251910548.


Splicing the Difference: Harnessing the Complexity of the Transcriptome in Hematopoiesis.

Maul-Newby H, Halene S Exp Hematol. 2024; 140():104655.

PMID: 39393608 PMC: 11732257. DOI: 10.1016/j.exphem.2024.104655.


References
1.
Fields S, Song O . A novel genetic system to detect protein-protein interactions. Nature. 1989; 340(6230):245-6. DOI: 10.1038/340245a0. View

2.
Wang C, Chua K, Seghezzi W, Lees E, Gozani O, REED R . Phosphorylation of spliceosomal protein SAP 155 coupled with splicing catalysis. Genes Dev. 1998; 12(10):1409-14. PMC: 316838. DOI: 10.1101/gad.12.10.1409. View

3.
REED R . The organization of 3' splice-site sequences in mammalian introns. Genes Dev. 1989; 3(12B):2113-23. DOI: 10.1101/gad.3.12b.2113. View

4.
REED R . Protein composition of mammalian spliceosomes assembled in vitro. Proc Natl Acad Sci U S A. 1990; 87(20):8031-5. PMC: 54886. DOI: 10.1073/pnas.87.20.8031. View

5.
Zamore P, Green M . Biochemical characterization of U2 snRNP auxiliary factor: an essential pre-mRNA splicing factor with a novel intranuclear distribution. EMBO J. 1991; 10(1):207-14. PMC: 452631. DOI: 10.1002/j.1460-2075.1991.tb07937.x. View