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The Lives of Cells, Recorded

Overview
Journal Nat Rev Genet
Specialty Genetics
Date 2024 Nov 25
PMID 39587306
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Abstract

A paradigm for biology is emerging in which cells can be genetically programmed to write their histories into their own genomes. These records can subsequently be read, and the cellular histories reconstructed, which for each cell could include a record of its lineage relationships, extrinsic influences, internal states and physical locations, over time. DNA recording has the potential to transform the way that we study developmental and disease processes. Recent advances in genome engineering are driving the development of systems for DNA recording, and meanwhile single-cell and spatial omics technologies increasingly enable the recovery of the recorded information. Combined with advances in computational and phylogenetic inference algorithms, the DNA recording paradigm is beginning to bear fruit. In this Perspective, we explore the rationale and technical basis of DNA recording, what aspects of cellular biology might be recorded and how, and the types of discovery that we anticipate this paradigm will enable.

References
1.
Woodworth M, Girskis K, Walsh C . Building a lineage from single cells: genetic techniques for cell lineage tracking. Nat Rev Genet. 2017; 18(4):230-244. PMC: 5459401. DOI: 10.1038/nrg.2016.159. View

2.
Zon L . Intrinsic and extrinsic control of haematopoietic stem-cell self-renewal. Nature. 2008; 453(7193):306-13. DOI: 10.1038/nature07038. View

3.
Livesey F, Cepko C . Vertebrate neural cell-fate determination: lessons from the retina. Nat Rev Neurosci. 2001; 2(2):109-18. DOI: 10.1038/35053522. View

4.
Schurch C, Bhate S, Barlow G, Phillips D, Noti L, Zlobec I . Coordinated Cellular Neighborhoods Orchestrate Antitumoral Immunity at the Colorectal Cancer Invasive Front. Cell. 2020; 182(5):1341-1359.e19. PMC: 7479520. DOI: 10.1016/j.cell.2020.07.005. View

5.
Patel S, Christodoulou C, Weinreb C, Yu Q, Lummertz da Rocha E, Pepe-Mooney B . Lifelong multilineage contribution by embryonic-born blood progenitors. Nature. 2022; 606(7915):747-753. DOI: 10.1038/s41586-022-04804-z. View