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DNA and the Origins of Life in Micaceous Clay

Overview
Journal Biophys J
Publisher Cell Press
Specialty Biophysics
Date 2022 Sep 21
PMID 36130604
Authors
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Abstract

Reproducible imaging of DNA by atomic force microscopy was a useful predecessor to Ned Seeman's DNA nanotechnology. Many of the products of DNA nanotechnology were imaged in the atomic force microscope. The mica substrate used in this atomic force microscopy research formed the inspiration for the hypothesis that micaceous clay was a likely habitat for the origins of life. Montmorillonite clay has been a successful substrate for the polymerization of amino acids and nucleotides into peptides and DNA oligomers in research on life's origins. Mica and montmorillonite have the same anionic lattice, with a hexagonal spacing of 0.5 nm. Micas are nonswelling clays, with potassium ions (K) holding the crystal sheets together, providing a stable environment for the processes and molecular complexes needed for the emergence of living cells. Montmorillonite crystal sheets are held together by smaller sodium ions (Na), which results in swelling and shrinking during wet-dry cycles, providing a less stable environment. Also, the cells in all types of living systems have high intracellular K concentrations, which makes mica a more likely habitat for the origins of life than montmorillonite. Finally, moving mica sheets provides mechanical energy at the split edges of the sheets in mica "books." This mechanical energy of mica sheets, moving open and shut, in response to fluid flow, may have preceded chemical energy at life's origins, powering early prebiotic processes, such as the formation of covalent bonds, the interactions of molecular complexes, and the budding off of protocells before the molecular mechanism of cell division had developed.

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References
1.
Maurer S, Nguyen G . Prebiotic Vesicle Formation and the Necessity of Salts. Orig Life Evol Biosph. 2015; 46(2-3):215-22. DOI: 10.1007/s11084-015-9476-8. View

2.
WOESE C . The universal ancestor. Proc Natl Acad Sci U S A. 1998; 95(12):6854-9. PMC: 22660. DOI: 10.1073/pnas.95.12.6854. View

3.
Hariadi R, Winfree E, Yurke B . Determining hydrodynamic forces in bursting bubbles using DNA nanotube mechanics. Proc Natl Acad Sci U S A. 2015; 112(45):E6086-95. PMC: 4653207. DOI: 10.1073/pnas.1424673112. View

4.
Schulman R, Yurke B, Winfree E . Robust self-replication of combinatorial information via crystal growth and scission. Proc Natl Acad Sci U S A. 2012; 109(17):6405-10. PMC: 3340064. DOI: 10.1073/pnas.1117813109. View

5.
Korolev N . How potassium came to be the dominant biological cation: of metabolism, chemiosmosis, and cation selectivity since the beginnings of life. Bioessays. 2020; 43(1):e2000108. DOI: 10.1002/bies.202000108. View