Innovations in Biophysics: A Sampling of Ideas Celebrating Ned Seeman's Legacy

Overview

Journal Biophys J

Publisher Cell Press

Specialty Biophysics

Date 2022 Dec 9

PMID 36493782

Authors

Tamar Schlick

Affiliations

Soon will be listed here.

References

Ijas H, Liedl T, Linko V, Posnjak G . A label-free light-scattering method to resolve assembly and disassembly of DNA nanostructures. Biophys J. 2023; 121(24):4800-4809. PMC: 9811603. DOI: 10.1016/j.bpj.2022.10.036. View

Cao X, Liu K, Yan S, Li S, Li Y, Jin T . Mechanical regulation of the helicase activity of Zika virus NS3. Biophys J. 2022; 121(24):4900-4908. PMC: 9808545. DOI: 10.1016/j.bpj.2022.07.030. View

Chhetri K, Jang Y, Lansac Y, Maiti P . Effect of phosphorylation of protamine-like cationic peptide on the binding affinity to DNA. Biophys J. 2022; 121(24):4830-4839. PMC: 9808561. DOI: 10.1016/j.bpj.2022.09.025. View

Chauhan N, Karanastasis A, Ullal C, Wang X . Homologous pairing in short double-stranded DNA-grafted colloidal microspheres. Biophys J. 2022; 121(24):4819-4829. PMC: 9811663. DOI: 10.1016/j.bpj.2022.09.037. View

Hansma H . DNA and the origins of life in micaceous clay. Biophys J. 2022; 121(24):4867-4873. PMC: 9808538. DOI: 10.1016/j.bpj.2022.08.032. View

Attou A, Zulske T, Wedemann G . Cohesin and CTCF complexes mediate contacts in chromatin loops depending on nucleosome positions. Biophys J. 2022; 121(24):4788-4799. PMC: 9811664. DOI: 10.1016/j.bpj.2022.10.044. View

Confederat S, Sandei I, Mohanan G, Walti C, Actis P . Nanopore fingerprinting of supramolecular DNA nanostructures. Biophys J. 2022; 121(24):4882-4891. PMC: 9808562. DOI: 10.1016/j.bpj.2022.08.020. View

Bogawat Y, Krishnan S, Simmel F, Santiago I . Tunable 2D diffusion of DNA nanostructures on lipid membranes. Biophys J. 2022; 121(24):4810-4818. PMC: 9811667. DOI: 10.1016/j.bpj.2022.10.015. View

Li K, Yatsunyk L, Neidle S . Machine learning shows torsion angle preferences in left-handed and right-handed quadruplex DNAs. Biophys J. 2022; 121(24):4874-4881. PMC: 9808593. DOI: 10.1016/j.bpj.2022.08.021. View

10.

Lu B, Vecchioni S, Ohayon Y, Canary J, Sha R . The wending rhombus: Self-assembling 3D DNA crystals. Biophys J. 2022; 121(24):4759-4765. PMC: 9808540. DOI: 10.1016/j.bpj.2022.08.019. View

11.

Sato R, Suzuki K, Yasuda Y, Suenaga A, Fukui K . RNAapt3D: RNA aptamer 3D-structural modeling database. Biophys J. 2022; 121(24):4770-4776. PMC: 9808543. DOI: 10.1016/j.bpj.2022.09.023. View

12.

Makhatadze G, Chen C, Khutsishvili I, Marky L . The volume changes of unfolding of dsDNA. Biophys J. 2022; 121(24):4892-4899. PMC: 9811605. DOI: 10.1016/j.bpj.2022.08.005. View

13.

Zhang C, Paluzzi V, Mao C . Tomography of DNA tiles influences the kinetics of surface-mediated DNA self-assembly. Biophys J. 2022; 121(24):4909-4914. PMC: 9808542. DOI: 10.1016/j.bpj.2022.07.025. View

14.

Berman H, DeTitta G . Crystallographic legacy of Ned Seeman. Biophys J. 2022; 121(24):4766-4769. PMC: 9808496. DOI: 10.1016/j.bpj.2022.07.006. View

15.

Egli M, Zhang S . Ned Seeman and the prediction of amino acid-basepair motifs mediating protein-nucleic acid recognition. Biophys J. 2022; 121(24):4777-4787. PMC: 9808504. DOI: 10.1016/j.bpj.2022.06.017. View

16.

Kilwing L, Lill P, Nathwani B, Daljit Singh J, Liedl T, Shih W . Three-phase DNA-origami stepper mechanism based on multi-leg interactions. Biophys J. 2022; 121(24):4860-4866. PMC: 9808544. DOI: 10.1016/j.bpj.2022.08.040. View

17.

Buchl A, Kopperger E, Vogt M, Langecker M, Simmel F, List J . Energy landscapes of rotary DNA origami devices determined by fluorescence particle tracking. Biophys J. 2022; 121(24):4849-4859. PMC: 9808541. DOI: 10.1016/j.bpj.2022.08.046. View

18.

Dreher Y, Fichtler J, Karfusehr C, Jahnke K, Xin Y, Keller A . Genotype-phenotype mapping with polyominos made from DNA origami tiles. Biophys J. 2022; 121(24):4840-4848. PMC: 9811662. DOI: 10.1016/j.bpj.2022.09.006. View

19.

Olson W, Li Y, Fenley M . Insights into DNA solvation found in protein-DNA structures. Biophys J. 2022; 121(24):4749-4758. PMC: 9808563. DOI: 10.1016/j.bpj.2022.11.019. View