» Articles » PMID: 34214465

Cryo-EM Structure of the Periplasmic Tunnel of T7 DNA-ejectosome at 2.7 Å Resolution

Overview
Journal Mol Cell
Publisher Cell Press
Specialty Cell Biology
Date 2021 Jul 2
PMID 34214465
Citations 18
Authors
Affiliations
Soon will be listed here.
Abstract

Hershey and Chase used bacteriophage T2 genome delivery inside Escherichia coli to demonstrate that DNA, not protein, is the genetic material. Seventy years later, our understanding of viral genome delivery in prokaryotes remains limited, especially for short-tailed phages of the Podoviridae family. These viruses expel mysterious ejection proteins found inside the capsid to form a DNA-ejectosome for genome delivery into bacteria. Here, we reconstitute the phage T7 DNA-ejectosome components gp14, gp15, and gp16 and solve the periplasmic tunnel structure at 2.7 Å resolution. We find that gp14 forms an outer membrane pore, gp15 assembles into a 210 Å hexameric DNA tube spanning the host periplasm, and gp16 extends into the host cytoplasm forming a ∼4,200 residue hub. Gp16 promotes gp15 oligomerization, coordinating peptidoglycan hydrolysis, DNA binding, and lipid insertion. The reconstituted gp15:gp16 complex lacks channel-forming activity, suggesting that the pore for DNA passage forms only transiently during genome ejection.

Citing Articles

Atlas of Interactions Between Decoration Proteins and Major Capsid Proteins of Coliphage N4.

McJarrow-Keller K, Eruera A, Crowe A, Kumaran R, Hyun J, Bostina M Viruses. 2025; 17(1).

PMID: 39861808 PMC: 11768535. DOI: 10.3390/v17010019.


Sxt1, Isolated from a Therapeutic Phage Cocktail, Is a Broader Host Range Relative of the Phage T3.

Iarema P, Kotovskaya O, Skutel M, Drobiazko A, Moiseenko A, Sokolova O Viruses. 2025; 16(12.

PMID: 39772213 PMC: 11680406. DOI: 10.3390/v16121905.


Conformational changes in and translocation of small proteins: insights into the ejection mechanism of podophages.

Zheng J, Xiao H, Pang H, Wang L, Song J, Chen W J Virol. 2024; 99(1):e0124924.

PMID: 39704524 PMC: 11784390. DOI: 10.1128/jvi.01249-24.


Targeting Pseudomonas aeruginosa biofilm with an evolutionary trained bacteriophage cocktail exploiting phage resistance trade-offs.

Kunisch F, Campobasso C, Wagemans J, Yildirim S, Chan B, Schaudinn C Nat Commun. 2024; 15(1):8572.

PMID: 39362854 PMC: 11450229. DOI: 10.1038/s41467-024-52595-w.


Integrative structural analysis of Pseudomonas phage DEV reveals a genome ejection motor.

Lokareddy R, Hou C, Forti F, Iglesias S, Li F, Pavlenok M Nat Commun. 2024; 15(1):8482.

PMID: 39353939 PMC: 11445570. DOI: 10.1038/s41467-024-52752-1.


References
1.
Laskowski R . PDBsum new things. Nucleic Acids Res. 2008; 37(Database issue):D355-9. PMC: 2686501. DOI: 10.1093/nar/gkn860. View

2.
Holm L, Rosenstrom P . Dali server: conservation mapping in 3D. Nucleic Acids Res. 2010; 38(Web Server issue):W545-9. PMC: 2896194. DOI: 10.1093/nar/gkq366. View

3.
Letunic I, Bork P . Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees. Nucleic Acids Res. 2016; 44(W1):W242-5. PMC: 4987883. DOI: 10.1093/nar/gkw290. View

4.
Pettersen E, Goddard T, Huang C, Couch G, Greenblatt D, Meng E . UCSF Chimera--a visualization system for exploratory research and analysis. J Comput Chem. 2004; 25(13):1605-12. DOI: 10.1002/jcc.20084. View

5.
Dal Peraro M, van der Goot F . Pore-forming toxins: ancient, but never really out of fashion. Nat Rev Microbiol. 2015; 14(2):77-92. DOI: 10.1038/nrmicro.2015.3. View