Advanced Approaches for Elucidating Structures of Large RNAs Using NMR Spectroscopy and Complementary Methods
Overview
Affiliations
NMR spectroscopy is a key technique that has significantly advanced our understanding of RNA structure and dynamics. However, determination of large RNA structures by NMR spectroscopy remains a significant technical challenge. In this review, we highlight advances that facilitate NMR studies of large RNAs, including methods for sample preparation, isotope labeling strategies, and data acquisition. In addition, we review hybrid approaches that have been instrumental in the structure determination of large RNAs.
RNA sample optimization for cryo-EM analysis.
Chen X, Wang L, Xie J, Nowak J, Luo B, Zhang C Nat Protoc. 2024; .
PMID: 39548288 DOI: 10.1038/s41596-024-01072-1.
Selective deuteration of an RNA:RNA complex for structural analysis using small-angle scattering.
Munsayac A, Leite W, Hopkins J, Hall I, ONeill H, Keane S bioRxiv. 2024; .
PMID: 39314299 PMC: 11419110. DOI: 10.1101/2024.09.09.612093.
RNA structure determination: From 2D to 3D.
Deng J, Fang X, Huang L, Li S, Xu L, Ye K Fundam Res. 2024; 3(5):727-737.
PMID: 38933295 PMC: 11197651. DOI: 10.1016/j.fmre.2023.06.001.
Haslecker R, Pham V, Glanzer D, Kreutz C, Kwaku Dayie T, DSouza V Nat Commun. 2023; 14(1):8422.
PMID: 38110450 PMC: 10728113. DOI: 10.1038/s41467-023-44254-3.
Structure of pre-miR-31 reveals an active role in Dicer-TRBP complex processing.
Ma S, Kotar A, Hall I, Grote S, Rouskin S, Keane S Proc Natl Acad Sci U S A. 2023; 120(39):e2300527120.
PMID: 37725636 PMC: 10523476. DOI: 10.1073/pnas.2300527120.