Dinucleotide Degradation by REXO2 Maintains Promoter Specificity in Mammalian Mitochondria
Overview
Authors
Affiliations
Oligoribonucleases are conserved enzymes that degrade short RNA molecules of up to 5 nt in length and are assumed to constitute the final stage of RNA turnover. Here we demonstrate that REXO2 is a specialized dinucleotide-degrading enzyme that shows no preference between RNA and DNA dinucleotide substrates. A heart- and skeletal-muscle-specific knockout mouse displays elevated dinucleotide levels and alterations in gene expression patterns indicative of aberrant dinucleotide-primed transcription initiation. We find that dinucleotides act as potent stimulators of mitochondrial transcription initiation in vitro. Our data demonstrate that increased levels of dinucleotides can be used to initiate transcription, leading to an increase in transcription levels from both mitochondrial promoters and other, nonspecific sequence elements in mitochondrial DNA. Efficient RNA turnover by REXO2 is thus required to maintain promoter specificity and proper regulation of transcription in mammalian mitochondria.
Age-invariant genes: multi-tissue identification and characterization of murine reference genes.
Gonzalez J, Thrush-Evensen K, Meer M, Levine M, Higgins-Chen A Aging (Albany NY). 2025; 17(1):170-202.
PMID: 39873648 PMC: 11810070. DOI: 10.18632/aging.206192.
The Vsr-like protein FASTKD4 regulates the stability and polyadenylation of the MT-ND3 mRNA.
Yang X, Stentenbach M, Hughes L, Siira S, Lau K, Hothorn M Nucleic Acids Res. 2024; 53(4).
PMID: 39727163 PMC: 11879112. DOI: 10.1093/nar/gkae1261.
Heterozygous de novo dominant negative mutation of REXO2 results in interferonopathy.
Idiiatullina E, Al-Azab M, Lin M, Hrovat-Schaale K, Liu Z, Li X Nat Commun. 2024; 15(1):6685.
PMID: 39107301 PMC: 11303720. DOI: 10.1038/s41467-024-50878-w.
Age-Invariant Genes: Multi-Tissue Identification and Characterization of Murine Reference Genes.
Gonzalez J, Thrush K, Meer M, Levine M, Higgins-Chen A bioRxiv. 2024; .
PMID: 38645168 PMC: 11030416. DOI: 10.1101/2024.04.09.588721.
Antiviral type III CRISPR signalling via conjugation of ATP and SAM.
Chi H, Hoikkala V, Gruschow S, Graham S, Shirran S, White M Nature. 2023; 622(7984):826-833.
PMID: 37853119 PMC: 10600005. DOI: 10.1038/s41586-023-06620-5.