» Articles » PMID: 31223458

Discovery of Irreversible Inhibitors Targeting Histone Methyltransferase, SMYD3

Abstract

SMYD3 is a histone methyltransferase that regulates gene transcription, and its overexpression is associated with multiple human cancers. A novel class of tetrahydroacridine compounds which inhibit SMYD3 through a covalent mechanism of action is identified. Optimization of these irreversible inhibitors resulted in the discovery of 4-chloroquinolines, a new class of covalent warheads. Tool compound exhibits high potency by inhibiting SMYD3's enzymatic activity and showing antiproliferative activity against HepG2 in 3D cell culture. Our findings suggest that covalent inhibition of SMYD3 may have an impact on SMYD3 biology by affecting expression levels, and this warrants further exploration.

Citing Articles

SMYD family in cancer: epigenetic regulation and molecular mechanisms of cancer proliferation, metastasis, and drug resistance.

Han T, Kim D, Son M, Cho H Exp Mol Med. 2024; 56(11):2325-2336.

PMID: 39482529 PMC: 11611910. DOI: 10.1038/s12276-024-01326-8.


Discovery of a Tunable Heterocyclic Electrophile 4-Chloro-pyrazolopyridine That Defines a Unique Subset of Ligandable Cysteines.

Kim H, Byun D, Thakur K, Ritchie J, Xie Y, Holewinski R ACS Chem Biol. 2024; 19(5):1082-1092.

PMID: 38629450 PMC: 11107811. DOI: 10.1021/acschembio.4c00025.


SMYD3 represses tumor-intrinsic interferon response in HPV-negative squamous cell carcinoma of the head and neck.

Nigam N, Bernard B, Sevilla S, Kim S, Dar M, Tsai D Cell Rep. 2023; 42(7):112823.

PMID: 37463106 PMC: 10407766. DOI: 10.1016/j.celrep.2023.112823.


Targeting Epigenetic Changes Mediated by Members of the SMYD Family of Lysine Methyltransferases.

Padilla A, Manganaro J, Huesgen L, Roess D, Brown M, Crans D Molecules. 2023; 28(4).

PMID: 36838987 PMC: 9967872. DOI: 10.3390/molecules28042000.


Applying Self-Supervised Representation Learning for Emotion Recognition Using Physiological Signals.

Montero Quispe K, Utyiama D, Dos Santos E, Oliveira H, Souto E Sensors (Basel). 2022; 22(23).

PMID: 36501803 PMC: 9736913. DOI: 10.3390/s22239102.


References
1.
Hamamoto R, Silva F, Tsuge M, Nishidate T, Katagiri T, Nakamura Y . Enhanced SMYD3 expression is essential for the growth of breast cancer cells. Cancer Sci. 2006; 97(2):113-8. PMC: 11159510. DOI: 10.1111/j.1349-7006.2006.00146.x. View

2.
ONeill R, Bhamidipati A, Bi X, Deb-Basu D, Cahill L, Ferrante J . Isoelectric focusing technology quantifies protein signaling in 25 cells. Proc Natl Acad Sci U S A. 2006; 103(44):16153-8. PMC: 1618307. DOI: 10.1073/pnas.0607973103. View

3.
Wang S, Luo X, Shen J, Zou J, Lu Y, Xi T . Knockdown of SMYD3 by RNA interference inhibits cervical carcinoma cell growth and invasion in vitro. BMB Rep. 2008; 41(4):294-9. DOI: 10.5483/bmbrep.2008.41.4.294. View

4.
Johnson C, Linsky T, Yoon D, Person M, Fast W . Discovery of halopyridines as quiescent affinity labels: inactivation of dimethylarginine dimethylaminohydrolase. J Am Chem Soc. 2011; 133(5):1553-62. PMC: 3038607. DOI: 10.1021/ja109207m. View

5.
Foreman K, Brown M, Park F, Emtage S, Harriss J, Das C . Structural and functional profiling of the human histone methyltransferase SMYD3. PLoS One. 2011; 6(7):e22290. PMC: 3136521. DOI: 10.1371/journal.pone.0022290. View