» Articles » PMID: 3031013

Molecular Cloning, Characterization, and Chromosomal Localization of DapF, the Escherichia Coli Gene for Diaminopimelate Epimerase

Overview
Journal J Bacteriol
Specialty Microbiology
Date 1987 Apr 1
PMID 3031013
Citations 33
Authors
Affiliations
Soon will be listed here.
Abstract

The Escherichia coli dapF gene was isolated from a cosmid library as a result of screening for clones overproducing diaminopimelate epimerase. Insertional mutagenesis was performed on the cloned dapF gene with a mini-Mu transposon, leading to chloramphenicol resistance. One of these insertions was transferred onto the chromosome by a double-recombination event, allowing us to obtain a dapF mutant. This mutant accumulated large amounts of LL-diaminopimelate, confirming the blockage in the step catalyzed by the dapF product, but did not require meso-diaminopimelate for growth. The dapF gene was localized in the 85-min region of the E. coli chromosome between cya and uvrD.

Citing Articles

Loss of YhcB results in dysregulation of coordinated peptidoglycan, LPS and phospholipid synthesis during Escherichia coli cell growth.

Goodall E, Isom G, Rooke J, Pullela K, Icke C, Yang Z PLoS Genet. 2021; 17(12):e1009586.

PMID: 34941903 PMC: 8741058. DOI: 10.1371/journal.pgen.1009586.


Molecular and Mechanistic Characterization of PddB, the First PLP-Independent 2,4-Diaminobutyric Acid Racemase Discovered in an Actinobacterial D-Amino Acid Homopolymer Biosynthesis.

Yamanaka K, Ozaki R, Hamano Y, Oikawa T Front Microbiol. 2021; 12:686023.

PMID: 34177872 PMC: 8225329. DOI: 10.3389/fmicb.2021.686023.


Peptidoglycan: Structure, Synthesis, and Regulation.

Garde S, Chodisetti P, Reddy M EcoSal Plus. 2021; 9(2).

PMID: 33470191 PMC: 11168573. DOI: 10.1128/ecosalplus.ESP-0010-2020.


Competing Substrates for the Bifunctional Diaminopimelic Acid Epimerase/Glutamate Racemase Modulate Peptidoglycan Synthesis in Chlamydia trachomatis.

Singh R, Slade J, Brockett M, Mendez D, Liechti G, Maurelli A Infect Immun. 2020; 89(1).

PMID: 33106295 PMC: 7927921. DOI: 10.1128/IAI.00401-20.


Genome Mining of the Genus for Biosynthetic and Biodegradation Potential.

Malik A, Kim Y, Kim S Genes (Basel). 2020; 11(10).

PMID: 33022985 PMC: 7601586. DOI: 10.3390/genes11101166.


References
1.
De Geus P, van Die I, Bergmans H, Tommassen J, DE HAAS G . Molecular cloning of pldA, the structural gene for outer membrane phospholipase of E. coli K12. Mol Gen Genet. 1983; 190(1):150-5. DOI: 10.1007/BF00330338. View

2.
ANTIA M, Hoare D, WORK E . The stereoisomers of alpha epsilon-diaminopimelic acid. III. Properties and distribution of diaminopimelic acid racemase, an enzyme causing interconversion of the LL and meso isomers. Biochem J. 1957; 65(3):448-59. PMC: 1199896. DOI: 10.1042/bj0650448. View

3.
Easton A, Kushner S . Transcription of the uvrD gene of Escherichia coli is controlled by the lexA repressor and by attenuation. Nucleic Acids Res. 1983; 11(24):8625-40. PMC: 326612. DOI: 10.1093/nar/11.24.8625. View

4.
Hohn B, Collins J . A small cosmid for efficient cloning of large DNA fragments. Gene. 1980; 11(3-4):291-8. DOI: 10.1016/0378-1119(80)90069-4. View

5.
Roy A, Danchin A . Restriction map of the cya region of the Escherichia coli K12 chromosome. Biochimie. 1981; 63(8-9):719-22. DOI: 10.1016/s0300-9084(81)80220-9. View