» Articles » PMID: 29118093

Current Perspectives in Fragment-based Lead Discovery (FBLD)

Overview
Journal Essays Biochem
Specialty Biochemistry
Date 2017 Nov 10
PMID 29118093
Citations 61
Authors
Affiliations
Soon will be listed here.
Abstract

It is over 20 years since the first fragment-based discovery projects were disclosed. The methods are now mature for most 'conventional' targets in drug discovery such as enzymes (kinases and proteases) but there has also been growing success on more challenging targets, such as disruption of protein-protein interactions. The main application is to identify tractable chemical startpoints that non-covalently modulate the activity of a biological molecule. In this essay, we overview current practice in the methods and discuss how they have had an impact in lead discovery - generating a large number of fragment-derived compounds that are in clinical trials and two medicines treating patients. In addition, we discuss some of the more recent applications of the methods in chemical biology - providing chemical tools to investigate biological molecules, mechanisms and systems.

Citing Articles

Perspectives on Applications of F-NMR in Fragment-Based Drug Discovery.

Li Q, Kang C Molecules. 2024; 29(23).

PMID: 39683906 PMC: 11643073. DOI: 10.3390/molecules29235748.


Development of a high-throughput screening system targeting the protein-protein interactions between PRL and CNNM.

Funato Y, Mimura M, Nunomura K, Lin B, Fujii S, Haruta J Sci Rep. 2024; 14(1):25432.

PMID: 39455715 PMC: 11511866. DOI: 10.1038/s41598-024-76269-1.


Application of CoLD-CoP to Detecting Competitively and Cooperatively Binding Ligands.

Patnala S, Robles R, Snyder D Biomolecules. 2024; 14(9).

PMID: 39334902 PMC: 11430148. DOI: 10.3390/biom14091136.


Learnt representations of proteins can be used for accurate prediction of small molecule binding sites on experimentally determined and predicted protein structures.

Carbery A, Buttenschoen M, Skyner R, von Delft F, Deane C J Cheminform. 2024; 16(1):32.

PMID: 38486231 PMC: 10941399. DOI: 10.1186/s13321-024-00821-4.


Construction of Histone-Protein Complex Structures by Peptide Growing.

Zsido B, Bayarsaikhan B, Borzsei R, Hetenyi C Int J Mol Sci. 2023; 24(18).

PMID: 37762134 PMC: 10530865. DOI: 10.3390/ijms241813831.


References
1.
Ludlow R, Verdonk M, Saini H, Tickle I, Jhoti H . Detection of secondary binding sites in proteins using fragment screening. Proc Natl Acad Sci U S A. 2015; 112(52):15910-5. PMC: 4703025. DOI: 10.1073/pnas.1518946112. View

2.
Pearce N, Krojer T, Bradley A, Collins P, Nowak R, Talon R . A multi-crystal method for extracting obscured crystallographic states from conventionally uninterpretable electron density. Nat Commun. 2017; 8:15123. PMC: 5413968. DOI: 10.1038/ncomms15123. View

3.
Souers A, Leverson J, Boghaert E, Ackler S, Catron N, Chen J . ABT-199, a potent and selective BCL-2 inhibitor, achieves antitumor activity while sparing platelets. Nat Med. 2013; 19(2):202-8. DOI: 10.1038/nm.3048. View

4.
Schiebel J, Krimmer S, Rower K, Knorlein A, Wang X, Park A . High-Throughput Crystallography: Reliable and Efficient Identification of Fragment Hits. Structure. 2016; 24(8):1398-1409. DOI: 10.1016/j.str.2016.06.010. View

5.
Congreve M, Carr R, Murray C, Jhoti H . A 'rule of three' for fragment-based lead discovery?. Drug Discov Today. 2003; 8(19):876-7. DOI: 10.1016/s1359-6446(03)02831-9. View