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ADME-Space: a New Tool for Medicinal Chemists to Explore ADME Properties

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Journal Sci Rep
Specialty Science
Date 2017 Jul 27
PMID 28743970
Citations 22
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Abstract

We introduce a new chemical space for drugs and drug-like molecules, exclusively based on their in silico ADME behaviour. This ADME-Space is based on self-organizing map (SOM) applied to 26,000 molecules. Twenty accurate QSPR models, describing important ADME properties, were developed and, successively, used as new molecular descriptors not related to molecular structure. Applications include permeability, active transport, metabolism and bioavailability studies, but the method can be even used to discuss drug-drug interactions (DDIs) or it can be extended to additional ADME properties. Thus, the ADME-Space opens a new framework for the multi-parametric data analysis in drug discovery where all ADME behaviours of molecules are condensed in one map: it allows medicinal chemists to simultaneously monitor several ADME properties, to rapidly select optimal ADME profiles, retrieve warning on potential ADME problems and DDIs or select proper in vitro experiments.

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References
1.
Maggiora G . On outliers and activity cliffs--why QSAR often disappoints. J Chem Inf Model. 2006; 46(4):1535. DOI: 10.1021/ci060117s. View

2.
Mahar Doan K, Humphreys J, Webster L, Wring S, Shampine L, Serabjit-Singh C . Passive permeability and P-glycoprotein-mediated efflux differentiate central nervous system (CNS) and non-CNS marketed drugs. J Pharmacol Exp Ther. 2002; 303(3):1029-37. DOI: 10.1124/jpet.102.039255. View

3.
Cruciani G, Pastor M, Guba W . VolSurf: a new tool for the pharmacokinetic optimization of lead compounds. Eur J Pharm Sci. 2000; 11 Suppl 2:S29-39. DOI: 10.1016/s0928-0987(00)00162-7. View

4.
Sedykh A, Fourches D, Duan J, Hucke O, Garneau M, Zhu H . Human intestinal transporter database: QSAR modeling and virtual profiling of drug uptake, efflux and interactions. Pharm Res. 2012; 30(4):996-1007. PMC: 3596480. DOI: 10.1007/s11095-012-0935-x. View

5.
Lombardo F, Obach R, Varma M, Stringer R, Berellini G . Clearance mechanism assignment and total clearance prediction in human based upon in silico models. J Med Chem. 2014; 57(10):4397-405. DOI: 10.1021/jm500436v. View