Lista M, Jousset A, Cheng M, Saint-Andre V, Perrot E, Rodrigues M
    
    
    Retrovirology. 2023; 20(1):10.
  
  
    PMID: 37254203
    
          PMC: 10228017.
    
          DOI: 10.1186/s12977-023-00625-8.
      
 
                                  
  
    Kyung J, Jeon M, Lee I
    
    
    Front Plant Sci. 2022; 13:964931.
  
  
    PMID: 36035698
    
          PMC: 9411803.
    
          DOI: 10.3389/fpls.2022.964931.
      
 
                                  
  
    Kuzin V, Wiegard A, Cameron D, Baranello L
    
    
    STAR Protoc. 2022; 3(3):101581.
  
  
    PMID: 35942340
    
          PMC: 9356208.
    
          DOI: 10.1016/j.xpro.2022.101581.
      
 
                                  
  
    Pommier Y, Nussenzweig A, Takeda S, Austin C
    
    
    Nat Rev Mol Cell Biol. 2022; 23(6):407-427.
  
  
    PMID: 35228717
    
          PMC: 8883456.
    
          DOI: 10.1038/s41580-022-00452-3.
      
 
                                  
  
    Jha R, Levens D, Kouzine F
    
    
    Nucleus. 2022; 13(1):94-115.
  
  
    PMID: 35220881
    
          PMC: 8890386.
    
          DOI: 10.1080/19491034.2022.2038868.
      
 
                              
              
                              
                                      
  Telomeres and Subtelomeres Dynamics in the Context of Early Chromosome Interactions During Meiosis and Their Implications in Plant Breeding.
  
    Aguilar M, Prieto P
    
    
    Front Plant Sci. 2021; 12:672489.
  
  
    PMID: 34149773
    
          PMC: 8212018.
    
          DOI: 10.3389/fpls.2021.672489.
      
 
                                          
                                                          
  Topoisomerase IIα represses transcription by enforcing promoter-proximal pausing.
  
    Herrero-Ruiz A, Martinez-Garcia P, Terron-Bautista J, Millan-Zambrano G, Lieberman J, Jimeno-Gonzalez S
    
    
    Cell Rep. 2021; 35(2):108977.
  
  
    PMID: 33852840
    
          PMC: 8052185.
    
          DOI: 10.1016/j.celrep.2021.108977.
      
 
                                          
                                                          
  Chromatin-based mechanisms to coordinate convergent overlapping transcription.
  
    Inagaki S, Takahashi M, Takashima K, Oya S, Kakutani T
    
    
    Nat Plants. 2021; 7(3):295-302.
  
  
    PMID: 33649596
    
    
          DOI: 10.1038/s41477-021-00868-3.
      
 
                                          
                                                          
  Wheat chromatin architecture is organized in genome territories and transcription factories.
  
    Concia L, Veluchamy A, Ramirez-Prado J, Martin-Ramirez A, Huang Y, Perez M
    
    
    Genome Biol. 2020; 21(1):104.
  
  
    PMID: 32349780
    
          PMC: 7189446.
    
          DOI: 10.1186/s13059-020-01998-1.
      
 
                                          
                                                          
  Loop-closure kinetics reveal a stable, right-handed DNA intermediate in Cre recombination.
  
    Shoura M, Giovan S, Vetcher A, Ziraldo R, Hanke A, Levene S
    
    
    Nucleic Acids Res. 2020; 48(8):4371-4381.
  
  
    PMID: 32182357
    
          PMC: 7192630.
    
          DOI: 10.1093/nar/gkaa153.
      
 
                                          
                                                          
  Role of CTCF in DNA damage response.
  
    Tanwar V, Jose C, Cuddapah S
    
    
    Mutat Res Rev Mutat Res. 2019; 780:61-68.
  
  
    PMID: 31395350
    
          PMC: 6690391.
    
          DOI: 10.1016/j.mrrev.2018.02.002.
      
 
                                          
                                                          
  Closing the DNA replication cycle: from simple circular molecules to supercoiled and knotted DNA catenanes.
  
    Schvartzman J, Hernandez P, Krimer D, Dorier J, Stasiak A
    
    
    Nucleic Acids Res. 2019; 47(14):7182-7198.
  
  
    PMID: 31276584
    
          PMC: 6698734.
    
          DOI: 10.1093/nar/gkz586.
      
 
                                          
                                                          
  Old cogs, new tricks: the evolution of gene expression in a chromatin context.
  
    Talbert P, Meers M, Henikoff S
    
    
    Nat Rev Genet. 2019; 20(5):283-297.
  
  
    PMID: 30886348
    
    
          DOI: 10.1038/s41576-019-0105-7.
      
 
                                          
                                                          
  Insights Into  Oncogene Promoter Regulation.
  
    Ochoa B, Chico Y, Martinez M
    
    
    Front Oncol. 2019; 8:606.
  
  
    PMID: 30619748
    
          PMC: 6297716.
    
          DOI: 10.3389/fonc.2018.00606.
      
 
                                          
                                                          
  Are TADs supercoiled?.
  
    Racko D, Benedetti F, Dorier J, Stasiak A
    
    
    Nucleic Acids Res. 2018; 47(2):521-532.
  
  
    PMID: 30395328
    
          PMC: 6344874.
    
          DOI: 10.1093/nar/gky1091.
      
 
                                          
                                                          
  DNA Supercoiling, Topoisomerases, and Cohesin: Partners in Regulating Chromatin Architecture?.
  
    Bjorkegren C, Baranello L
    
    
    Int J Mol Sci. 2018; 19(3).
  
  
    PMID: 29547555
    
          PMC: 5877745.
    
          DOI: 10.3390/ijms19030884.
      
 
                                          
                                                          
  The Use of Psoralen Photobinding to Study Transcription-Induced Supercoiling.
  
    Kouzine F, Baranello L, Levens D
    
    
    Methods Mol Biol. 2017; 1703:95-108.
  
  
    PMID: 29177736
    
          PMC: 7433354.
    
          DOI: 10.1007/978-1-4939-7459-7_7.
      
 
                                          
                                                          
  Transcription-induced supercoiling as the driving force of chromatin loop extrusion during formation of TADs in interphase chromosomes.
  
    Racko D, Benedetti F, Dorier J, Stasiak A
    
    
    Nucleic Acids Res. 2017; 46(4):1648-1660.
  
  
    PMID: 29140466
    
          PMC: 5829651.
    
          DOI: 10.1093/nar/gkx1123.
      
 
                                          
                                                          
  The dynamic interplay between DNA topoisomerases and DNA topology.
  
    Seol Y, Neuman K
    
    
    Biophys Rev. 2017; 8(Suppl 1):101-111.
  
  
    PMID: 28510219
    
          PMC: 5418509.
    
          DOI: 10.1007/s12551-016-0240-8.
      
 
                                          
                                                          
  Permanganate/S1 Nuclease Footprinting Reveals Non-B DNA Structures with Regulatory Potential across a Mammalian Genome.
  
    Kouzine F, Wojtowicz D, Baranello L, Yamane A, Nelson S, Resch W
    
    
    Cell Syst. 2017; 4(3):344-356.e7.
  
  
    PMID: 28237796
    
          PMC: 7432990.
    
          DOI: 10.1016/j.cels.2017.01.013.