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Topology of Mammalian Developmental Enhancers and Their Regulatory Landscapes

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Journal Nature
Specialty Science
Date 2013 Oct 25
PMID 24153303
Citations 266
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Abstract

How a complex animal can arise from a fertilized egg is one of the oldest and most fascinating questions of biology, the answer to which is encoded in the genome. Body shape and organ development, and their integration into a functional organism all depend on the precise expression of genes in space and time. The orchestration of transcription relies mostly on surrounding control sequences such as enhancers, millions of which form complex regulatory landscapes in the non-coding genome. Recent research shows that high-order chromosome structures make an important contribution to enhancer functionality by triggering their physical interactions with target genes.

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References
1.
Bender M, Roach J, Halow J, Close J, Alami R, Bouhassira E . Targeted deletion of 5'HS1 and 5'HS4 of the beta-globin locus control region reveals additive activity of the DNaseI hypersensitive sites. Blood. 2001; 98(7):2022-7. DOI: 10.1182/blood.v98.7.2022. View

2.
Banerji J, Rusconi S, Schaffner W . Expression of a beta-globin gene is enhanced by remote SV40 DNA sequences. Cell. 1981; 27(2 Pt 1):299-308. DOI: 10.1016/0092-8674(81)90413-x. View

3.
Andrey G, Montavon T, Mascrez B, Gonzalez F, Noordermeer D, Leleu M . A switch between topological domains underlies HoxD genes collinearity in mouse limbs. Science. 2013; 340(6137):1234167. DOI: 10.1126/science.1234167. View

4.
Lower K, Hughes J, De Gobbi M, Henderson S, Viprakasit V, Fisher C . Adventitious changes in long-range gene expression caused by polymorphic structural variation and promoter competition. Proc Natl Acad Sci U S A. 2009; 106(51):21771-6. PMC: 2799829. DOI: 10.1073/pnas.0909331106. View

5.
Zinzen R, Girardot C, Gagneur J, Braun M, Furlong E . Combinatorial binding predicts spatio-temporal cis-regulatory activity. Nature. 2009; 462(7269):65-70. DOI: 10.1038/nature08531. View