L1 Expression and Regulation in Humans and Rodents
Overview
Authors
Affiliations
Long interspersed elements type 1 (LINE-1s, or L1s) have impacted mammalian genomes at multiple levels. L1 transcription is mainly controlled by its 5' untranslated region (5'UTR), which differs significantly among active human and rodent L1 families. In this review, L1 expression and its regulation are examined in the context of human and rodent development. First, endogenous L1 expression patterns in three different species-human, rat, and mouse-are compared and contrasted. A detailed account of relevant experimental evidence is presented according to the source material, such as cell lines, tumors, and normal somatic and germline tissues from different developmental stages. Second, factors involved in the regulation of L1 expression at both transcriptional and posttranscriptional levels are discussed. These include transcription factors, DNA methylation, PIWI-interacting RNAs (piRNAs), RNA interference (RNAi), and posttranscriptional host factors. Similarities and differences between human and rodent L1s are highlighted. Third, recent findings from transgenic mouse models of L1 are summarized and contrasted with those from endogenous L1 studies. Finally, the challenges and opportunities for L1 mouse models are discussed.
YY1 is a transcriptional activator of the mouse LINE-1 Tf subfamily.
Saha K, Nielsen G, Nandani R, Zhang Y, Kong L, Ye P Nucleic Acids Res. 2024; 52(21):12878-12894.
PMID: 39460630 PMC: 11602158. DOI: 10.1093/nar/gkae949.
Foxg1 bimodally tunes L1-mRNA and -DNA dynamics in the developing murine neocortex.
Liuzzi G, Artimagnella O, Frisari S, Mallamaci A Development. 2024; 151(10).
PMID: 38655654 PMC: 11190451. DOI: 10.1242/dev.202292.
YY1 is a transcriptional activator of mouse LINE-1 Tf subfamily.
Saha K, Nielsen G, Nandani R, Kong L, Ye P, An W bioRxiv. 2024; .
PMID: 38260579 PMC: 10802269. DOI: 10.1101/2024.01.03.573552.
Repetitive DNA sequence detection and its role in the human genome.
Liao X, Zhu W, Zhou J, Li H, Xu X, Zhang B Commun Biol. 2023; 6(1):954.
PMID: 37726397 PMC: 10509279. DOI: 10.1038/s42003-023-05322-y.
The Role of Transposable Elements of the Human Genome in Neuronal Function and Pathology.
Chesnokova E, Beletskiy A, Kolosov P Int J Mol Sci. 2022; 23(10).
PMID: 35628657 PMC: 9148063. DOI: 10.3390/ijms23105847.