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Revolver is a New Class of Transposon-like Gene Composing the Triticeae Genome

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Journal DNA Res
Date 2008 Feb 28
PMID 18303044
Citations 13
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Abstract

Revolver discovered in the Triticeae plant is a novel class of transposon-like gene and a major component of the large cereal genome. An 89 bp segment of Revolver that is enriched in the genome of rye was isolated by deleting the DNA sequences common to rye and wheat. The entire structure of Revolver was determined by using rye genomic clones, which were screened by the 89 bp probe. Revolver consists of 2929-3041 bp with an inverted repeated sequence on each end and is dispersed through all seven chromosomes of the rye genome. Revolver is transcriptionally active, and the isolated full-length cDNA (726 bp) reveals that Revolver harbors a single gene consisting of three exons (342, 88, and 296 bp) and two introns (750 and 1237 bp), and encodes 139 amino acid residues of protein, which shows similarity to some transcriptional regulators. Revolver variants ranging from 2665 to 4269 bp, in which 5' regions were destructed, indicate structural diversities around the first exon. Revolver does not share identity with any known class I or class II autonomous transposable elements of any living species. DNA blot analysis of Triticeae plants shows that Revolver has existed since the diploid progenitor of wheat, and has been amplified or lost in several species during the evolution of the Triticeae.

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References
1.
Bennetzen J . Transposable element contributions to plant gene and genome evolution. Plant Mol Biol. 2000; 42(1):251-69. View

2.
Bennetzen J . The Mutator transposable element system of maize. Curr Top Microbiol Immunol. 1996; 204:195-229. DOI: 10.1007/978-3-642-79795-8_9. View

3.
Wicker T, Stein N, Albar L, Feuillet C, Schlagenhauf E, Keller B . Analysis of a contiguous 211 kb sequence in diploid wheat (Triticum monococcum L.) reveals multiple mechanisms of genome evolution. Plant J. 2001; 26(3):307-16. DOI: 10.1046/j.1365-313x.2001.01028.x. View

4.
Prak E, Kazazian Jr H . Mobile elements and the human genome. Nat Rev Genet. 2001; 1(2):134-44. DOI: 10.1038/35038572. View

5.
Flavell R, Bennett M, Smith J, Smith D . Genome size and the proportion of repeated nucleotide sequence DNA in plants. Biochem Genet. 1974; 12(4):257-69. DOI: 10.1007/BF00485947. View