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Sensitive Phenotypic Detection of Minor Drug-resistant Human Immunodeficiency Virus Type 1 Reverse Transcriptase Variants

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Specialty Microbiology
Date 2005 Nov 8
PMID 16272507
Citations 6
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Abstract

Detection of drug-resistant variants is important for the clinical management of human immunodeficiency virus type 1 (HIV-1) infection and for studies on the evolution of drug resistance. Here we show that hybrid elements composed of the Saccharomyces cerevisiae retrotransposon Ty1 and the reverse transcriptase (RT) of HIV-1 are useful tools for detecting, monitoring, and isolating drug-resistant reverse transcriptases. This sensitive phenotypic assay is able to detect nonnucleoside reverse transcriptase inhibitor-resistant RT domains derived from mixtures of infectious molecular clones of HIV-1 in plasma and from clinical samples when the variants comprise as little as 0.3 to 1% of the virus population. Our assay can characterize the activities and drug susceptibilities of both known and novel reverse transcriptase variants and should prove useful in studies of the evolution and clinical significance of minor drug-resistant viral variants.

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References
1.
OMeara D, Wilbe K, Leitner T, Hejdeman B, Albert J, Lundeberg J . Monitoring resistance to human immunodeficiency virus type 1 protease inhibitors by pyrosequencing. J Clin Microbiol. 2001; 39(2):464-73. PMC: 87760. DOI: 10.1128/JCM.39.2.464-473.2001. View

2.
Lindstrom A, Albert J . A simple and sensitive 'in-house' method for determining genotypic drug resistance in HIV-1. J Virol Methods. 2002; 107(1):45-51. DOI: 10.1016/s0166-0934(02)00188-x. View

3.
Cunningham S, Ank B, Lewis D, Lu W, Wantman M, Dileanis J . Performance of the applied biosystems ViroSeq human immunodeficiency virus type 1 (HIV-1) genotyping system for sequence-based analysis of HIV-1 in pediatric plasma samples. J Clin Microbiol. 2001; 39(4):1254-7. PMC: 87920. DOI: 10.1128/JCM.39.4.1254-1257.2001. View

4.
Shafer R, Hertogs K, Zolopa A, Warford A, Bloor S, Betts B . High degree of interlaboratory reproducibility of human immunodeficiency virus type 1 protease and reverse transcriptase sequencing of plasma samples from heavily treated patients. J Clin Microbiol. 2001; 39(4):1522-9. PMC: 87964. DOI: 10.1128/JCM.39.4.1522-1529.2001. View

5.
Jarmy G, Heinkelein M, Weissbrich B, Jassoy C, Rethwilm A . Phenotypic analysis of the sensitivity of HIV-1 to inhibitors of the reverse transcriptase, protease, and integrase using a self-inactivating virus vector system. J Med Virol. 2001; 64(3):223-31. DOI: 10.1002/jmv.1040. View