Kelly D, Jere K, Darby A, Allen D, Iturriza-Gomara M
Access Microbiol. 2021; 3(3):000203.
PMID: 34151158
PMC: 8209700.
DOI: 10.1099/acmi.0.000203.
Yan L, Yu F, Zhang H, Zhao H, Wang L, Liang Z
Infect Drug Resist. 2020; 13:3763-3770.
PMID: 33122923
PMC: 7591230.
DOI: 10.2147/IDR.S272232.
Zhou S, Swanstrom R
Viruses. 2020; 12(8).
PMID: 32759675
PMC: 7472098.
DOI: 10.3390/v12080850.
Parkin N, Avila-Rios S, Bibby D, Brumme C, Eshleman S, Harrigan P
Viruses. 2020; 12(7).
PMID: 32605062
PMC: 7411816.
DOI: 10.3390/v12070694.
Mbunkah H, Bertagnolio S, Hamers R, Hunt G, Inzaule S, Wit T
J Infect Dis. 2019; 221(10):1584-1597.
PMID: 31809534
PMC: 7184901.
DOI: 10.1093/infdis/jiz650.
Characterization of minority HIV-1 drug resistant variants in the United Kingdom following the verification of a deep sequencing-based HIV-1 genotyping and tropism assay.
Silver N, Paynter M, McAllister G, Atchley M, Sayir C, Short J
AIDS Res Ther. 2018; 15(1):18.
PMID: 30409215
PMC: 6223033.
DOI: 10.1186/s12981-018-0206-y.
Limited Marginal Utility of Deep Sequencing for HIV Drug Resistance Testing in the Age of Integrase Inhibitors.
Dalmat R, Makhsous N, Pepper G, Magaret A, Jerome K, Wald A
J Clin Microbiol. 2018; 56(12).
PMID: 30305383
PMC: 6258839.
DOI: 10.1128/JCM.01443-18.
Characterization of HIV-1 Near Full-Length Proviral Genome Quasispecies from Patients with Undetectable Viral Load Undergoing First-Line HAART Therapy.
Alves B, Siqueira J, Garrido M, Botelho O, Prellwitz I, Ribeiro S
Viruses. 2017; 9(12).
PMID: 29257103
PMC: 5744166.
DOI: 10.3390/v9120392.
Sensitive detection of HIV-1 resistance to Zidovudine and impact on treatment outcomes in low- to middle-income countries.
Gibson R, Nickel G, Crawford M, Kyeyune F, Venner C, Nankya I
Infect Dis Poverty. 2017; 6(1):163.
PMID: 29202874
PMC: 5716384.
DOI: 10.1186/s40249-017-0377-0.
Efficient and unbiased metagenomic recovery of RNA virus genomes from human plasma samples.
Manso C, Bibby D, Mbisa J
Sci Rep. 2017; 7(1):4173.
PMID: 28646219
PMC: 5482852.
DOI: 10.1038/s41598-017-02239-5.
Deep Sequencing of HIV-1 RNA and DNA in Newly Diagnosed Patients with Baseline Drug Resistance Showed No Indications for Hidden Resistance and Is Biased by Strong Interference of Hypermutation.
Dauwe K, Staelens D, Vancoillie L, Mortier V, Verhofstede C
J Clin Microbiol. 2016; 54(6):1605-1615.
PMID: 27076656
PMC: 4879278.
DOI: 10.1128/JCM.00030-16.
Low-Frequency Drug Resistance in HIV-Infected Ugandans on Antiretroviral Treatment Is Associated with Regimen Failure.
Kyeyune F, Gibson R, Nankya I, Venner C, Metha S, Akao J
Antimicrob Agents Chemother. 2016; 60(6):3380-97.
PMID: 27001818
PMC: 4879357.
DOI: 10.1128/AAC.00038-16.
A Follow-Up of the Multicenter Collaborative Study on HIV-1 Drug Resistance and Tropism Testing Using 454 Ultra Deep Pyrosequencing.
St John E, Simen B, Turenchalk G, Braverman M, Abbate I, Aerssens J
PLoS One. 2016; 11(1):e0146687.
PMID: 26756901
PMC: 4710461.
DOI: 10.1371/journal.pone.0146687.
Quantifying Next Generation Sequencing Sample Pre-Processing Bias in HIV-1 Complete Genome Sequencing.
Vrancken B, Trovao N, Baele G, Van Wijngaerden E, Vandamme A, Van Laethem K
Viruses. 2016; 8(1).
PMID: 26751471
PMC: 4728572.
DOI: 10.3390/v8010012.
Resistance detected by pyrosequencing following zidovudine monotherapy for prevention of HIV-1 mother-to-child-transmission.
Olson S, Ngo-Giang-Huong N, Beck I, Deng W, Britto P, Shapiro D
AIDS. 2015; 29(12):1467-71.
PMID: 26244386
PMC: 4618483.
DOI: 10.1097/QAD.0000000000000737.
Population-based human immunodeficiency virus 1 drug resistance profiles among individuals who experienced virological failure to first-line antiretroviral therapy in Henan, China during 2010-2011.
Liu J, Wu Y, Yang W, Xue X, Sun G, Liu C
AIDS Res Ther. 2015; 12:22.
PMID: 26120348
PMC: 4483220.
DOI: 10.1186/s12981-015-0062-y.
Past, present and future molecular diagnosis and characterization of human immunodeficiency virus infections.
Tang Y, Ou C
Emerg Microbes Infect. 2015; 1(8):e19.
PMID: 26038427
PMC: 3630918.
DOI: 10.1038/emi.2012.15.
Single Genome Analysis for the Detection of Linked Multiclass Drug Resistance Mutations in HIV-1-Infected Children After Failure of Protease Inhibitor-Based First-Line Therapy.
Lange C, Hue S, Violari A, Cotton M, Gibb D, Babiker A
J Acquir Immune Defic Syndr. 2015; 69(2):138-44.
PMID: 25923117
PMC: 4679142.
DOI: 10.1097/QAI.0000000000000568.
Low-frequency drug-resistant HIV-1 and risk of virological failure to first-line NNRTI-based ART: a multicohort European case-control study using centralized ultrasensitive 454 pyrosequencing.
Cozzi-Lepri A, Noguera-Julian M, Di Giallonardo F, Schuurman R, Daumer M, Aitken S
J Antimicrob Chemother. 2014; 70(3):930-40.
PMID: 25336166
PMC: 4319483.
DOI: 10.1093/jac/dku426.
Minority drug-resistant HIV-1 variants in treatment naïve East-African and Caucasian patients detected by allele-specific real-time PCR.
Ekici H, Amogne W, Aderaye G, Lindquist L, Sonnerborg A, Abdurahman S
PLoS One. 2014; 9(10):e111042.
PMID: 25333961
PMC: 4205091.
DOI: 10.1371/journal.pone.0111042.