» Articles » PMID: 15466158

A Dynamic Transcriptional Network Communicates Growth Potential to Ribosome Synthesis and Critical Cell Size

Overview
Journal Genes Dev
Specialty Molecular Biology
Date 2004 Oct 7
PMID 15466158
Citations 346
Authors
Affiliations
Soon will be listed here.
Abstract

Cell-size homeostasis entails a fundamental balance between growth and division. The budding yeast Saccharomyces cerevisiae establishes this balance by enforcing growth to a critical cell size prior to cell cycle commitment (Start) in late G1 phase. Nutrients modulate the critical size threshold, such that cells are large in rich medium and small in poor medium. Here, we show that two potent negative regulators of Start, Sfp1 and Sch9, are activators of the ribosomal protein (RP) and ribosome biogenesis (Ribi) regulons, the transcriptional programs that dictate ribosome synthesis rate in accord with environmental and intracellular conditions. Sfp1 and Sch9 are required for carbon-source modulation of cell size and are regulated at the level of nuclear localization and abundance, respectively. Sfp1 nuclear concentration responds rapidly to nutrient and stress conditions and is regulated by the Ras/PKA and TOR signaling pathways. In turn, Sfp1 influences the nuclear localization of Fhl1 and Ifh1, which bind to RP gene promoters. Starvation or the absence of Sfp1 causes Fhl1 and Ifh1 to localize to nucleolar regions, concomitant with reduced RP gene transcription. These findings suggest that nutrient signals set the critical cell-size threshold via Sfp1 and Sch9-mediated control of ribosome biosynthetic rates.

Citing Articles

Regulatory dynamics of Sch9 in response to cytosolic acidification: From spatial reconfiguration to cellular adaptation to stresses.

Fujii R, Katsukawa R, Takeda E, Itakura E, Matsuura A iScience. 2025; 28(1):111573.

PMID: 39811664 PMC: 11731984. DOI: 10.1016/j.isci.2024.111573.


Regulated resource reallocation is transcriptionally hard wired into the yeast stress response.

Kocik R, Gasch A bioRxiv. 2024; .

PMID: 39677602 PMC: 11642900. DOI: 10.1101/2024.12.03.626567.


The zinc-finger transcription factor Sfp1 imprints specific classes of mRNAs and links their synthesis to cytoplasmic decay.

Kelbert M, Jordan-Pla A, de Miguel-Jimenez L, Garcia-Martinez J, Selitrennik M, Guterman A Elife. 2024; 12.

PMID: 39356734 PMC: 11446548. DOI: 10.7554/eLife.90766.


Modeling the START transition in the budding yeast cell cycle.

Ravi J, Samart K, Zwolak J PLoS Comput Biol. 2024; 20(8):e1012048.

PMID: 39093881 PMC: 11324117. DOI: 10.1371/journal.pcbi.1012048.


Protein Kinase A Negatively Regulates the Acetic Acid Stress Response in .

Bourgeois N, Black J, Bhondeley M, Liu Z Microorganisms. 2024; 12(7).

PMID: 39065219 PMC: 11278818. DOI: 10.3390/microorganisms12071452.


References
1.
Casamayor A, Torrance P, Kobayashi T, Thorner J, Alessi D . Functional counterparts of mammalian protein kinases PDK1 and SGK in budding yeast. Curr Biol. 1999; 9(4):186-97. DOI: 10.1016/s0960-9822(99)80088-8. View

2.
Powers T, Walter P . Regulation of ribosome biogenesis by the rapamycin-sensitive TOR-signaling pathway in Saccharomyces cerevisiae. Mol Biol Cell. 1999; 10(4):987-1000. PMC: 25225. DOI: 10.1091/mbc.10.4.987. View

3.
Montagne J, Stewart M, Stocker H, Hafen E, Kozma S, Thomas G . Drosophila S6 kinase: a regulator of cell size. Science. 1999; 285(5436):2126-9. DOI: 10.1126/science.285.5436.2126. View

4.
Warner J . The economics of ribosome biosynthesis in yeast. Trends Biochem Sci. 1999; 24(11):437-40. DOI: 10.1016/s0968-0004(99)01460-7. View

5.
Wijnen H, Futcher B . Genetic analysis of the shared role of CLN3 and BCK2 at the G(1)-S transition in Saccharomyces cerevisiae. Genetics. 1999; 153(3):1131-43. PMC: 1460821. DOI: 10.1093/genetics/153.3.1131. View