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Proceedings

Proceedings is a scientific journal, published since 2000 in English. The journal's country of origin is United States.
Details
Abbr. Proc IPDPS (Conf)
Start 2000
End Continuing
Country United States
Language English
Recent Articles
1.
Predicting and Comparing the Performance of Array Management Libraries
Kang D, Rubel O, Byna S, Blanas S
Proc IPDPS (Conf) . 2021 Oct; 2020:906-915. PMID: 34632467
Many applications are increasingly becoming I/O-bound. To improve scalability, analytical models of parallel I/O performance are often consulted to determine possible I/O optimizations. However, I/O performance modeling has predominantly focused...
2.
Architectural Implications for Spatial Object Association Algorithms
Kumar V, Kurc T, Saltz J, Abdulla G, Kohn S, Matarazzo C
Proc IPDPS (Conf) . 2015 Feb; :1-12. PMID: 25692244
Spatial object association, also referred to as crossmatch of spatial datasets, is the problem of identifying and comparing objects in two or more datasets based on their positions in a...
3.
Orientation Refinement of Virus Structures with Unknown Symmetry
Ji Y, Marinescu D, Zhang W, Baker T
Proc IPDPS (Conf) . 2015 Jan; 2003:1530-2075. PMID: 25580470
Structural biology, in particular the structure determination of viruses and other large macromolecular complexes leads to data- and compute-intensive problems that require resources well beyond those available on a single...
4.
High-throughput Analysis of Large Microscopy Image Datasets on CPU-GPU Cluster Platforms
Teodoro G, Pan T, Kurc T, Kong J, Cooper L, Podhorszki N, et al.
Proc IPDPS (Conf) . 2014 Nov; 2013:103-114. PMID: 25419546
Analysis of large pathology image datasets offers significant opportunities for the investigation of disease morphology, but the resource requirements of analysis pipelines limit the scale of such studies. Motivated by...
5.
Accelerating Large Scale Image Analyses on Parallel, CPU-GPU Equipped Systems
Teodoro G, Kurc T, Pan T, Cooper L, Kong J, Widener P, et al.
Proc IPDPS (Conf) . 2014 Nov; 2012:1093-1104. PMID: 25419545
The past decade has witnessed a major paradigm shift in high performance computing with the introduction of accelerators as general purpose processors. These computing devices make available very high parallel...
6.
Parallel Mapping Approaches for GNUMAP
Clement N, Clement M, Snell Q, Johnson W
Proc IPDPS (Conf) . 2013 Feb; 2011:435-443. PMID: 23396612
Mapping short next-generation reads to reference genomes is an important element in SNP calling and expression studies. A major limitation to large-scale whole-genome mapping is the large memory requirements for...
7.
Translational Research Design Templates, Grid Computing, and HPC
Saltz J, Oster S, Hastings S, Langella S, Ferreira R, Permar J, et al.
Proc IPDPS (Conf) . 2011 Sep; 2008(14-18 April 2008):1-15. PMID: 21311740
Design templates that involve discovery, analysis, and integration of information resources commonly occur in many scientific research projects. In this paper we present examples of design templates from the biomedical...
8.
Comparison of Current BLAST Software on Nucleotide Sequences
Elizabeth Cha I, Rouchka E
Proc IPDPS (Conf) . 2011 Sep; 19:8. PMID: 21243090
The computational power needed for searching exponentially growing databases, such as GenBank, has increased dramatically. Three different implementations of the most widely used sequence alignment tool, known as BLAST (Basic...
9.
Optimization of Applications with Non-blocking Neighborhood Collectives via Multisends on the Blue Gene/P Supercomputer
Kumar S, Heidelberger P, Chen D, Hines M
Proc IPDPS (Conf) . 2011 Jun; 2010:1-11. PMID: 21666880
We explore the multisend interface as a data mover interface to optimize applications with neighborhood collective communication operations. One of the limitations of the current MPI 2.1 standard is that...