Yuriy Orlov
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Explore the profile of Yuriy Orlov including associated specialties, affiliations and a list of published articles.
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10
Citations
52
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Recent Articles
1.
AthRiboNC: an Arabidopsis database for ncRNAs with coding potential revealed from ribosome profiling
Shen Y, Liu L, Liu E, Li S, Orlov Y, Ivanisenko V, et al.
Database (Oxford)
. 2024 Dec;
2024.
PMID: 39689042
Non-coding RNAs (ncRNAs) are traditionally considered incapable of encoding proteins, but new evidence suggests that small open reading frames (sORFs) within ncRNAs can actually encode biologically functional small peptides. Despite...
2.
Cheng M, Zhu Y, Yu H, Shao L, Zhang Y, Li L, et al.
Funct Integr Genomics
. 2024 Nov;
24(6):217.
PMID: 39557706
An increasing number of non-coding RNAs (ncRNAs) are found to have roles in gene expression and cellular regulations. However, there are still a large number of ncRNAs whose functions remain...
3.
Samarina L, Malyukova L, Wang S, Bobrovskikh A, Doroshkov A, Shkhalakhova R, et al.
Int J Mol Sci
. 2024 Nov;
25(21).
PMID: 39519276
For the first time, we used an vs. experimental design to reveal core pathways under nitrogen deficiency (ND) in an evergreen tree crop. These pathways were related to lignin biosynthesis,...
4.
Ishankulov T, Danilov G, Kotik K, Orlov Y, Shifrin M, Potapov A
Stud Health Technol Inform
. 2022 Jun;
290:263-267.
PMID: 35673014
Automated abstracts classification could significantly facilitate scientific literature screening. The classification of short texts could be based on their statistical properties. This research aimed to evaluate the quality of short...
5.
Danilov G, Ishankulov T, Kotik K, Orlov Y, Shifrin M, Potapov A
Stud Health Technol Inform
. 2021 May;
281:83-87.
PMID: 34042710
Automated text classification is a natural language processing (NLP) technology that could significantly facilitate scientific literature selection. A specific topical dataset of 630 article abstracts was obtained from the PubMed...
6.
Danilov G, Ishankulov T, Orlov Y, Shifrin M, Kotik K, Potapov A
Stud Health Technol Inform
. 2020 Jul;
272:191-194.
PMID: 32604633
The number of scientific publications is constantly growing to make their processing extremely time-consuming. We hypothesized that a user-defined literature tracking may be augmented by machine learning on article summaries....
7.
Chen M, Harrison A, Shanahan H, Orlov Y
J Integr Bioinform
. 2017 Sep;
14(3).
PMID: 28902625
No abstract available.
8.
Winata C, Kondrychyn I, Kumar V, Srinivasan K, Orlov Y, Ravishankar A, et al.
PLoS Genet
. 2013 Nov;
9(10):e1003852.
PMID: 24204288
Zic3 regulates early embryonic patterning in vertebrates. Loss of Zic3 function is known to disrupt gastrulation, left-right patterning, and neurogenesis. However, molecular events downstream of this transcription factor are poorly...
9.
Orlov Y, Xu H, Afonnikov D, Lim B, Heng J, Yuan P, et al.
J Integr Bioinform
. 2012 Sep;
9(2):211.
PMID: 22987856
Advances in high throughput sequencing technology have enabled the identification of transcription factor (TF) binding sites in genome scale. TF binding studies are important for medical applications and stem cell...
10.
Goh W, Orlov Y, Li J, Clarke N
PLoS Comput Biol
. 2010 Jan;
6(1):e1000649.
PMID: 20098497
Genome wide maps of nucleosome occupancy in yeast have recently been produced through deep sequencing of nuclease-protected DNA. These maps have been obtained from both crosslinked and uncrosslinked chromatin in...