Valerie Wood
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Explore the profile of Valerie Wood including associated specialties, affiliations and a list of published articles.
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3871
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Recent Articles
1.
Matentzoglu N, Bello S, Stefancsik R, Alghamdi S, Anagnostopoulos A, Balhoff J, et al.
Genetics
. 2025 Mar;
PMID: 40048704
Phenotypic data are critical for understanding biological mechanisms and consequences of genomic variation, and are pivotal for clinical use cases such as disease diagnostics and treatment development. For over a...
2.
Paysan-Lafosse T, Andreeva A, Blum M, Chuguransky S, Grego T, Pinto B, et al.
Nucleic Acids Res
. 2024 Nov;
53(D1):D523-D534.
PMID: 39540428
The Pfam protein families database is a comprehensive collection of protein domains and families used for genome annotation and protein structure and function analysis (https://www.ebi.ac.uk/interpro/). This update describes major developments...
3.
Toro S, Anagnostopoulos A, Bello S, Blumberg K, Cameron R, Carmody L, et al.
J Biomed Semantics
. 2024 Oct;
15(1):19.
PMID: 39415214
Background: Ontologies are fundamental components of informatics infrastructure in domains such as biomedical, environmental, and food sciences, representing consensus knowledge in an accurate and computable form. However, their construction and...
4.
Matentzoglu N, Bello S, Stefancsik R, Alghamdi S, Anagnostopoulos A, Balhoff J, et al.
bioRxiv
. 2024 Sep;
PMID: 39345458
Phenotypic data are critical for understanding biological mechanisms and consequences of genomic variation, and are pivotal for clinical use cases such as disease diagnostics and treatment development. For over a...
5.
Rutherford K, Lera-Ramirez M, Wood V
Genetics
. 2024 Feb;
227(1).
PMID: 38376816
PomBase (https://www.pombase.org), the model organism database (MOD) for fission yeast, was recently awarded Global Core Biodata Resource (GCBR) status by the Global Biodata Coalition (GBC; https://globalbiodata.org/) after a rigorous selection...
6.
Lera-Ramirez M, Bahler J, Mata J, Rutherford K, Hoffman C, Lambert S, et al.
Genetics
. 2023 Sep;
225(3).
PMID: 37758508
Standardized nomenclature for genes, gene products, and isoforms is crucial to prevent ambiguity and enable clear communication of scientific data, facilitating efficient biocuration and data sharing. Standardized genotype nomenclature, which...
7.
Cuzick A, Seager J, Wood V, Urban M, Rutherford K, Hammond-Kosack K
Elife
. 2023 Jul;
12.
PMID: 37401199
The quantity and complexity of data being generated and published in biology has increased substantially, but few methods exist for capturing knowledge about phenotypes derived from molecular interactions between diverse...
8.
Balhoff J, Carbon S, Ebert D, Gaudet P, Harris N, Mi H, et al.
Genetics
. 2023 Mar;
224(1).
PMID: 36866529
The Gene Ontology (GO) knowledgebase (http://geneontology.org) is a comprehensive resource concerning the functions of genes and gene products (proteins and noncoding RNAs). GO annotations cover genes from organisms across the...
9.
Monzon V, Paysan-Lafosse T, Wood V, Bateman A
Bioinform Adv
. 2022 Nov;
2(1):vbac072.
PMID: 36408459
Motivation: The conventional methods to detect homologous protein pairs use the comparison of protein sequences. But the sequences of two homologous proteins may diverge significantly and consequently may be undetectable...
10.
de Crecy-Lagard V, Amorin de Hegedus R, Arighi C, Babor J, Bateman A, Blaby I, et al.
Database (Oxford)
. 2022 Aug;
2022.
PMID: 35961013
Over the last 25 years, biology has entered the genomic era and is becoming a science of 'big data'. Most interpretations of genomic analyses rely on accurate functional annotations of...