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PomBase: a Global Core Biodata Resource-growth, Collaboration, and Sustainability

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Journal Genetics
Specialty Genetics
Date 2024 Feb 20
PMID 38376816
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Abstract

PomBase (https://www.pombase.org), the model organism database (MOD) for fission yeast, was recently awarded Global Core Biodata Resource (GCBR) status by the Global Biodata Coalition (GBC; https://globalbiodata.org/) after a rigorous selection process. In this MOD review, we present PomBase's continuing growth and improvement over the last 2 years. We describe these improvements in the context of the qualitative GCBR indicators related to scientific quality, comprehensivity, accelerating science, user stories, and collaborations with other biodata resources. This review also showcases the depth of existing connections both within the biocuration ecosystem and between PomBase and its user community.

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References
1.
Anderson W . Data management: A global coalition to sustain core data. Nature. 2017; 543(7644):179. DOI: 10.1038/543179a. View

2.
Anil A, Choudhary K, Pandian R, Gupta P, Thakran P, Singh A . Splicing of branchpoint-distant exons is promoted by Cactin, Tls1 and the ubiquitin-fold-activated Sde2. Nucleic Acids Res. 2022; 50(17):10000-10014. PMC: 9508853. DOI: 10.1093/nar/gkac769. View

3.
Wilkinson M, Dumontier M, Aalbersberg I, Appleton G, Axton M, Baak A . The FAIR Guiding Principles for scientific data management and stewardship. Sci Data. 2016; 3:160018. PMC: 4792175. DOI: 10.1038/sdata.2016.18. View

4.
Hernandez-Elvira M, Sunnerhagen P . Post-transcriptional regulation during stress. FEMS Yeast Res. 2022; 22(1). PMC: 9246287. DOI: 10.1093/femsyr/foac025. View

5.
Bellen H, Hubbard E, Lehmann R, Madhani H, Solnica-Krezel L, Southard-Smith E . Model organism databases are in jeopardy. Development. 2022; 148(19). PMC: 10656462. DOI: 10.1242/dev.200193. View