Vadim Zalunin
Overview
Explore the profile of Vadim Zalunin including associated specialties, affiliations and a list of published articles.
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17
Citations
806
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Recent Articles
1.
Connor R, Shakya M, Yarmosh D, Maier W, Martin R, Bradford R, et al.
Viruses
. 2024 Mar;
16(3).
PMID: 38543795
Genomic sequencing of clinical samples to identify emerging variants of SARS-CoV-2 has been a key public health tool for curbing the spread of the virus. As a result, an unprecedented...
2.
Clough E, Barrett T, Wilhite S, Ledoux P, Evangelista C, Kim I, et al.
Nucleic Acids Res
. 2023 Nov;
52(D1):D138-D144.
PMID: 37933855
The Gene Expression Omnibus (GEO) is an international public repository that archives gene expression and epigenomics data sets generated by next-generation sequencing and microarray technologies. Data are typically submitted to...
3.
Connor R, Yarmosh D, Maier W, Shakya M, Martin R, Bradford R, et al.
bioRxiv
. 2022 Nov;
PMID: 36380755
During the COVID-19 pandemic, SARS-CoV-2 surveillance efforts integrated genome sequencing of clinical samples to identify emergent viral variants and to support rapid experimental examination of genome-informed vaccine and therapeutic designs....
4.
Marti-Carreras J, Rafael Gener A, D Miller S, Brito A, Camacho C, Connor R, et al.
Viruses
. 2020 Dec;
12(12).
PMID: 33322070
Viruses represent important test cases for data federation due to their genome size and the rapid increase in sequence data in publicly available databases. However, some consequences of previously decentralized...
5.
Connor R, Brister R, Buchmann J, Deboutte W, Edwards R, Marti-Carreras J, et al.
Genes (Basel)
. 2019 Sep;
10(9).
PMID: 31527408
A wealth of viral data sits untapped in publicly available metagenomic data sets when it might be extracted to create a usable index for the virological research community. We hypothesized...
6.
Silvester N, Alako B, Amid C, Cerdeno-Tarraga A, Clarke L, Cleland I, et al.
Nucleic Acids Res
. 2017 Nov;
46(D1):D36-D40.
PMID: 29140475
For 35 years the European Nucleotide Archive (ENA; https://www.ebi.ac.uk/ena) has been responsible for making the world's public sequencing data available to the scientific community. Advances in sequencing technology have driven...
7.
Jain M, Tyson J, Loose M, Ip C, Eccles D, OGrady J, et al.
F1000Res
. 2017 Aug;
6:760.
PMID: 28794860
Background: Long-read sequencing is rapidly evolving and reshaping the suite of opportunities for genomic analysis. For the MinION in particular, as both the platform and chemistry develop, the user community...
8.
Toribio A, Alako B, Amid C, Cerdeno-Tarraga A, Clarke L, Cleland I, et al.
Nucleic Acids Res
. 2016 Dec;
45(D1):D32-D36.
PMID: 27899630
The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) offers a rich platform for data sharing, publishing and archiving and a globally comprehensive data set for onward use by the scientific community. With...
9.
Ip C, Loose M, Tyson J, de Cesare M, Brown B, Jain M, et al.
F1000Res
. 2016 Feb;
4:1075.
PMID: 26834992
The advent of a miniaturized DNA sequencing device with a high-throughput contextual sequencing capability embodies the next generation of large scale sequencing tools. The MinION™ Access Programme (MAP) was initiated...
10.
Gibson R, Alako B, Amid C, Cerdeno-Tarraga A, Cleland I, Goodgame N, et al.
Nucleic Acids Res
. 2015 Nov;
44(D1):D58-66.
PMID: 26615190
The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) is a repository for the submission, maintenance and presentation of nucleotide sequence data and related sample and experimental information. In this article we report...