Daniel Vaughan
Overview
Explore the profile of Daniel Vaughan including associated specialties, affiliations and a list of published articles.
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Articles
12
Citations
356
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Recent Articles
1.
Courtot M, Cherubin L, Faulconbridge A, Vaughan D, Green M, Richardson D, et al.
Nucleic Acids Res
. 2018 Nov;
47(D1):D1172-D1178.
PMID: 30407529
The BioSamples database at EMBL-EBI provides a central hub for sample metadata storage and linkage to other EMBL-EBI resources. BioSamples has recently undergone major changes, both in terms of data...
2.
Pochron S, Nikakis J, Illuzzi K, Baatz A, Demirciyan L, Dhillon A, et al.
Environ Sci Pollut Res Int
. 2018 Feb;
25(12):11376-11383.
PMID: 29423690
Solid waste management struggles with the sustainable disposal of used tires. One solution involves shredding used tires into crumb rubber and using the material as infill for artificial turf. However,...
3.
Silvester N, Alako B, Amid C, Cerdeno-Tarraga A, Clarke L, Cleland I, et al.
Nucleic Acids Res
. 2017 Nov;
46(D1):D36-D40.
PMID: 29140475
For 35 years the European Nucleotide Archive (ENA; https://www.ebi.ac.uk/ena) has been responsible for making the world's public sequencing data available to the scientific community. Advances in sequencing technology have driven...
4.
Jimenez R, Kuzak M, Alhamdoosh M, Barker M, Batut B, Borg M, et al.
F1000Res
. 2017 Jul;
6.
PMID: 28751965
Scientific research relies on computer software, yet software is not always developed following practices that ensure its quality and sustainability. This manuscript does not aim to propose new software development...
5.
Toribio A, Alako B, Amid C, Cerdeno-Tarraga A, Clarke L, Cleland I, et al.
Nucleic Acids Res
. 2016 Dec;
45(D1):D32-D36.
PMID: 27899630
The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) offers a rich platform for data sharing, publishing and archiving and a globally comprehensive data set for onward use by the scientific community. With...
6.
Artaza H, Chue Hong N, Corpas M, Corpuz A, Hooft R, Jimenez R, et al.
F1000Res
. 2016 Sep;
5.
PMID: 27635232
Metrics for assessing adoption of good development practices are a useful way to ensure that software is sustainable, reusable and functional. Sustainability means that the software used today will be...
7.
Gibson R, Alako B, Amid C, Cerdeno-Tarraga A, Cleland I, Goodgame N, et al.
Nucleic Acids Res
. 2015 Nov;
44(D1):D58-66.
PMID: 26615190
The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) is a repository for the submission, maintenance and presentation of nucleotide sequence data and related sample and experimental information. In this article we report...
8.
Silvester N, Alako B, Amid C, Cerdeno-Tarraga A, Cleland I, Gibson R, et al.
Nucleic Acids Res
. 2014 Nov;
43(Database issue):D23-9.
PMID: 25404130
The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) is Europe's primary resource for nucleotide sequence information. With the growing volume and diversity of public sequencing data comes the need for increased sophistication...
9.
Pakseresht N, Alako B, Amid C, Cerdeno-Tarraga A, Cleland I, Gibson R, et al.
Nucleic Acids Res
. 2013 Nov;
42(Database issue):D38-43.
PMID: 24214989
The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) is a repository for the world public domain nucleotide sequence data output. ENA content covers a spectrum of data types including raw reads, assembly...
10.
Hunter S, Corbett M, Denise H, Fraser M, Gonzalez-Beltran A, Hunter C, et al.
Nucleic Acids Res
. 2013 Oct;
42(Database issue):D600-6.
PMID: 24165880
Metagenomics is a relatively recently established but rapidly expanding field that uses high-throughput next-generation sequencing technologies to characterize the microbial communities inhabiting different ecosystems (including oceans, lakes, soil, tundra, plants...