Travis Wheeler
Overview
Explore the profile of Travis Wheeler including associated specialties, affiliations and a list of published articles.
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Articles
7
Citations
193
Followers
0
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Recent Articles
1.
Gill T, Locskai L, Burton A, Alyenbaawi H, Wheeler T, Burton E, et al.
Methods Mol Biol
. 2023 Sep;
2707:3-22.
PMID: 37668902
We describe a straightforward, scalable method for administering traumatic brain injury (TBI) to zebrafish larvae. The pathological outcomes appear generalizable for all TBI types, but perhaps most closely model closed-skull,...
2.
Brodie J, Henao-Diaz L, Pratama B, Copeland C, Wheeler T, Helmy O
Am Nat
. 2023 Mar;
201(4):574-585.
PMID: 36957999
AbstractCommunity trait assembly, the formation of distributions of phenotypic characteristics across coexisting species, can occur via two main processes: filtering of trait distributions from the regional pool and in situ...
3.
Nord A, Carey K, Hornbeck P, Wheeler T
ACM BCB
. 2019 May;
2018:200-210.
PMID: 31080963
Multiple sequence alignment (MSA) is a classic problem in computational genomics. In typical use, MSA software is expected to align a collection of homologous genes, such as orthologs from multiple...
4.
Olson D, Wheeler T
ACM BCB
. 2019 May;
2018:37-46.
PMID: 31080962
In biological sequences, tandem repeats consist of tens to hundreds of residues of a repeated pattern, such as atgatgatgatgatg ('atg' repeated), often the result of replication slippage. Over time, these...
5.
Hornbeck P, Kornhauser J, Latham V, Murray B, Nandhikonda V, Nord A, et al.
Nucleic Acids Res
. 2018 Nov;
47(D1):D433-D441.
PMID: 30445427
For 15 years the mission of PhosphoSitePlus® (PSP, https://www.phosphosite.org) has been to provide comprehensive information and tools for the study of mammalian post-translational modifications (PTMs). The number of unique PTMs...
6.
Grimes M, Hall B, Foltz L, Levy T, Rikova K, Gaiser J, et al.
Sci Signal
. 2018 May;
11(531).
PMID: 29789295
Protein posttranslational modifications (PTMs) have typically been studied independently, yet many proteins are modified by more than one PTM type, and cell signaling pathways somehow integrate this information. We coupled...
7.
Kececioglu J, Kim E, Wheeler T
J Comput Biol
. 2010 Apr;
17(3):561-80.
PMID: 20377464
Accurately aligning distant protein sequences is notoriously difficult. Since the amino acid sequence alone often does not provide enough information to obtain accurate alignments under the standard alignment scoring functions,...