Sudharsan Padmarasu
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Explore the profile of Sudharsan Padmarasu including associated specialties, affiliations and a list of published articles.
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10
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897
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Recent Articles
1.
Guo W, Schreiber M, Marosi V, Bagnaresi P, Jorgensen M, Braune K, et al.
Nat Genet
. 2025 Feb;
57(2):441-450.
PMID: 39901014
A pan-transcriptome describes the transcriptional and post-transcriptional consequences of genome diversity from multiple individuals within a species. We developed a barley pan-transcriptome using 20 inbred genotypes representing domesticated barley diversity...
2.
Jayakodi M, Lu Q, Pidon H, Rabanus-Wallace M, Bayer M, Lux T, et al.
Nature
. 2024 Nov;
636(8043):654-662.
PMID: 39537924
Pangenomes are collections of annotated genome sequences of multiple individuals of a species. The structural variants uncovered by these datasets are a major asset to genetic analysis in crop plants....
3.
Jayakodi M, Golicz A, Kreplak J, Fechete L, Angra D, Bednar P, et al.
Nature
. 2023 Mar;
615(7953):652-659.
PMID: 36890232
Increasing the proportion of locally produced plant protein in currently meat-rich diets could substantially reduce greenhouse gas emissions and loss of biodiversity. However, plant protein production is hampered by the...
4.
Kale S, Schulthess A, Padmarasu S, Boeven P, Schacht J, Himmelbach A, et al.
Plant Biotechnol J
. 2022 May;
20(9):1730-1742.
PMID: 35562859
A resistance gene atlas is an integral component of the breeder's arsenal in the fight against evolving pathogens. Thanks to high-throughput sequencing, catalogues of resistance genes can be assembled even...
5.
Barchi L, Rabanus-Wallace M, Prohens J, Toppino L, Padmarasu S, Portis E, et al.
Plant J
. 2021 May;
107(2):579-596.
PMID: 33964091
Eggplant (Solanum melongena L.) is an important horticultural crop and one of the most widely grown vegetables from the Solanaceae family. It was domesticated from a wild, prickly progenitor carrying...
6.
Rabanus-Wallace M, Hackauf B, Mascher M, Lux T, Wicker T, Gundlach H, et al.
Nat Genet
. 2021 Mar;
53(4):564-573.
PMID: 33737754
Rye (Secale cereale L.) is an exceptionally climate-resilient cereal crop, used extensively to produce improved wheat varieties via introgressive hybridization and possessing the entire repertoire of genes necessary to enable...
7.
Shimizu K, Copetti D, Okada M, Wicker T, Tameshige T, Hatakeyama M, et al.
Plant Cell Physiol
. 2020 Nov;
62(1):8-27.
PMID: 33244607
Bread wheat is a major crop that has long been the focus of basic and breeding research. Assembly of its genome has been difficult because of its large size and...
8.
Walkowiak S, Gao L, Monat C, Haberer G, Kassa M, Brinton J, et al.
Nature
. 2020 Nov;
588(7837):277-283.
PMID: 33239791
Advances in genomics have expedited the improvement of several agriculturally important crops but similar efforts in wheat (Triticum spp.) have been more challenging. This is largely owing to the size...
9.
Jayakodi M, Padmarasu S, Haberer G, Bonthala V, Gundlach H, Monat C, et al.
Nature
. 2020 Nov;
588(7837):284-289.
PMID: 33239781
Genetic diversity is key to crop improvement. Owing to pervasive genomic structural variation, a single reference genome assembly cannot capture the full complement of sequence diversity of a crop species...
10.
Monat C, Padmarasu S, Lux T, Wicker T, Gundlach H, Himmelbach A, et al.
Genome Biol
. 2019 Dec;
20(1):284.
PMID: 31849336
Chromosome-scale genome sequence assemblies underpin pan-genomic studies. Recent genome assembly efforts in the large-genome Triticeae crops wheat and barley have relied on the commercial closed-source assembly algorithm DeNovoMagic. We present...