Silvie Fexova
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Explore the profile of Silvie Fexova including associated specialties, affiliations and a list of published articles.
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14
Citations
797
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Recent Articles
1.
Prakash A, Collins A, Vilmovsky L, Fexova S, Jones A, Vizcaino J
J Proteome Res
. 2025 Jan;
24(2):685-695.
PMID: 39764611
The PRIDE database is the largest public data repository of mass spectrometry-based proteomics data and currently stores more than 40,000 data sets covering a wide range of organisms, experimental techniques,...
2.
Wang S, Collins A, Prakash A, Fexova S, Papatheodorou I, Jones A, et al.
J Proteome Res
. 2024 May;
23(6):1948-1959.
PMID: 38717300
The availability of an increasingly large amount of public proteomics data sets presents an opportunity for performing combined analyses to generate comprehensive organism-wide protein expression maps across different organisms and...
3.
George N, Fexova S, Fuentes A, Madrigal P, Bi Y, Iqbal H, et al.
Nucleic Acids Res
. 2023 Nov;
52(D1):D107-D114.
PMID: 37992296
Expression Atlas (www.ebi.ac.uk/gxa) and its newest counterpart the Single Cell Expression Atlas (www.ebi.ac.uk/gxa/sc) are EMBL-EBI's knowledgebases for gene and protein expression and localisation in bulk and at single cell level....
4.
Wang S, Garcia-Seisdedos D, Prakash A, Kundu D, Collins A, George N, et al.
PLoS Comput Biol
. 2022 Jun;
18(6):e1010174.
PMID: 35714157
The increasingly large amount of proteomics data in the public domain enables, among other applications, the combined analyses of datasets to create comparative protein expression maps covering different organisms and...
5.
Moreno P, Fexova S, George N, Manning J, Miao Z, Mohammed S, et al.
Nucleic Acids Res
. 2021 Dec;
50(D1):D129-D140.
PMID: 34850121
The EMBL-EBI Expression Atlas is an added value knowledge base that enables researchers to answer the question of where (tissue, organism part, developmental stage, cell type) and under which conditions...
6.
Dai C, Fullgrabe A, Pfeuffer J, Solovyeva E, Deng J, Moreno P, et al.
Nat Commun
. 2021 Oct;
12(1):5854.
PMID: 34615866
The amount of public proteomics data is rapidly increasing but there is no standardized format to describe the sample metadata and their relationship with the dataset files in a way...
7.
Sarkans U, Fullgrabe A, Ali A, Athar A, Behrangi E, Diaz N, et al.
Nucleic Acids Res
. 2020 Nov;
49(D1):D1502-D1506.
PMID: 33211879
ArrayExpress (https://www.ebi.ac.uk/arrayexpress) is an archive of functional genomics data at EMBL-EBI, established in 2002, initially as an archive for publication-related microarray data and was later extended to accept sequencing-based data....
8.
Singh S, Giesecke A, Damulewicz M, Fexova S, Mazzotta G, Stanewsky R, et al.
Front Physiol
. 2019 Dec;
10:1442.
PMID: 31849700
has served as an excellent genetic model to decipher the molecular basis of the circadian clock. Two key proteins, PERIOD (PER) and TIMELESS (TIM), are particularly well explored and a...
9.
Papatheodorou I, Moreno P, Manning J, Munoz-Pomer Fuentes A, George N, Fexova S, et al.
Nucleic Acids Res
. 2019 Oct;
48(D1):D77-D83.
PMID: 31665515
Expression Atlas is EMBL-EBI's resource for gene and protein expression. It sources and compiles data on the abundance and localisation of RNA and proteins in various biological systems and contexts...
10.
Howe K, Contreras-Moreira B, De Silva N, Maslen G, Akanni W, Allen J, et al.
Nucleic Acids Res
. 2019 Oct;
48(D1):D689-D695.
PMID: 31598706
Ensembl Genomes (http://www.ensemblgenomes.org) is an integrating resource for genome-scale data from non-vertebrate species, complementing the resources for vertebrate genomics developed in the context of the Ensembl project (http://www.ensembl.org). Together, the...