Sherry L Jenkins
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Explore the profile of Sherry L Jenkins including associated specialties, affiliations and a list of published articles.
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23
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7029
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Recent Articles
1.
Evangelista J, Clarke D, Xie Z, Marino G, Utti V, Jenkins S, et al.
Commun Med (Lond)
. 2023 Jul;
3(1):98.
PMID: 37460679
Background: Birth defects are functional and structural abnormalities that impact about 1 in 33 births in the United States. They have been attributed to genetic and other factors such as ...
2.
Xie Z, Kropiwnicki E, Wojciechowicz M, Jagodnik K, Shu I, Bailey A, et al.
Curr Protoc
. 2022 Jul;
2(7):e487.
PMID: 35876555
The Library of Integrated Network-based Cellular Signatures (LINCS) was an NIH Common Fund program that aimed to expand our knowledge about human cellular responses to chemical, genetic, and microenvironment perturbations....
3.
Evangelista J, Clarke D, Xie Z, Lachmann A, Jeon M, Chen K, et al.
Nucleic Acids Res
. 2022 May;
50(W1):W697-W709.
PMID: 35524556
Millions of transcriptome samples were generated by the Library of Integrated Network-based Cellular Signatures (LINCS) program. When these data are processed into searchable signatures along with signatures extracted from Genotype-Tissue...
4.
Clarke D, Kuleshov M, Xie Z, Evangelista J, Meyers M, Kropiwnicki E, et al.
Bioinform Adv
. 2022 Apr;
2(1):vbac013.
PMID: 35368424
Motivation: Many biological and biomedical researchers commonly search for information about genes and drugs to gather knowledge from these resources. For the most part, such information is served as landing...
5.
Xie Z, Bailey A, Kuleshov M, Clarke D, Evangelista J, Jenkins S, et al.
Curr Protoc
. 2021 Mar;
1(3):e90.
PMID: 33780170
Profiling samples from patients, tissues, and cells with genomics, transcriptomics, epigenomics, proteomics, and metabolomics ultimately produces lists of genes and proteins that need to be further analyzed and integrated in...
6.
Clarke D, Rebman A, Bailey A, Wojciechowicz M, Jenkins S, Evangelista J, et al.
Front Immunol
. 2021 Mar;
12:636289.
PMID: 33763080
Although widely prevalent, Lyme disease is still under-diagnosed and misunderstood. Here we followed 73 acute Lyme disease patients and uninfected controls over a period of a year. At each visit,...
7.
Clarke D, Jeon M, Stein D, Moiseyev N, Kropiwnicki E, Dai C, et al.
Patterns (N Y)
. 2021 Mar;
2(3):100213.
PMID: 33748796
Jupyter Notebooks have transformed the communication of data analysis pipelines by facilitating a modular structure that brings together code, markdown text, and interactive visualizations. Here, we extended Jupyter Notebooks to...
8.
Clarke D, Wang L, Jones A, Wojciechowicz M, Torre D, Jagodnik K, et al.
Cell Syst
. 2019 Nov;
9(5):417-421.
PMID: 31677972
As more digital resources are produced by the research community, it is becoming increasingly important to harmonize and organize them for synergistic utilization. The findable, accessible, interoperable, and reusable (FAIR)...
9.
Keenan A, Jenkins S, Jagodnik K, Koplev S, He E, Torre D, et al.
Cell Syst
. 2017 Dec;
6(1):13-24.
PMID: 29199020
The Library of Integrated Network-Based Cellular Signatures (LINCS) is an NIH Common Fund program that catalogs how human cells globally respond to chemical, genetic, and disease perturbations. Resources generated by...
10.
Koleti A, Terryn R, Stathias V, Chung C, Cooper D, Turner J, et al.
Nucleic Acids Res
. 2017 Nov;
46(D1):D558-D566.
PMID: 29140462
The Library of Integrated Network-based Cellular Signatures (LINCS) program is a national consortium funded by the NIH to generate a diverse and extensive reference library of cell-based perturbation-response signatures, along...