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Rongkun Shen

Explore the profile of Rongkun Shen including associated specialties, affiliations and a list of published articles. Areas
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Articles 18
Citations 1339
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Recent Articles
11.
Bryant Jr D, Shen R, Priest H, Wong W, Mockler T
Bioinformatics . 2010 Apr; 26(12):1500-5. PMID: 20410051
Motivation: High-throughput sequencing technologies have recently made deep interrogation of expressed transcript sequences practical, both economically and temporally. Identification of intron/exon boundaries is an essential part of genome annotation, yet...
12.
Filichkin S, Priest H, Givan S, Shen R, Bryant D, Fox S, et al.
Genome Res . 2009 Oct; 20(1):45-58. PMID: 19858364
Alternative splicing can enhance transcriptome plasticity and proteome diversity. In plants, alternative splicing can be manifested at different developmental stages, and is frequently associated with specific tissue types or environmental...
13.
Cronn R, Liston A, Parks M, Gernandt D, Shen R, Mockler T
Nucleic Acids Res . 2008 Aug; 36(19):e122. PMID: 18753151
Organellar DNA sequences are widely used in evolutionary and population genetic studies, however, the conservative nature of chloroplast gene and genome evolution often limits phylogenetic resolution and statistical power. To...
14.
Michael T, Mockler T, Breton G, McEntee C, Byer A, Trout J, et al.
PLoS Genet . 2008 Feb; 4(2):e14. PMID: 18248097
Correct daily phasing of transcription confers an adaptive advantage to almost all organisms, including higher plants. In this study, we describe a hypothesis-driven network discovery pipeline that identifies biologically relevant...
15.
Shen R, Wheeler L, Mathews C
J Bioenerg Biomembr . 2006 Sep; 38(3-4):255-9. PMID: 16957984
Nucleoside diphosphate kinase plays a distinctive metabolic role as the enzyme poised between the last reaction of deoxyribonucleoside triphosphate (dNTP) biosynthesis and the DNA polymerization apparatus. In bacteriophage T4 infection,...
16.
Kim J, Shen R, Olcott M, Rajagopal I, Mathews C
J Biol Chem . 2005 Jun; 280(31):28221-9. PMID: 15941717
Adenylate kinase, which catalyzes the reversible ATP-dependent phosphorylation of AMP to ADP and dAMP to dADP, can also catalyze the conversion of nucleoside diphosphates to the corresponding triphosphates. Lu and...
17.
Kim J, Wheeler L, Shen R, Mathews C
Mol Microbiol . 2005 Feb; 55(5):1502-14. PMID: 15720556
Our laboratory has reported data suggesting a role for T4 phage gene 32 single-stranded DNA-binding protein in organizing a complex of deoxyribonucleotide-synthesizing enzymes at the replication fork. In this article...
18.
Shen R, Olcott M, Kim J, Rajagopal I, Mathews C
J Biol Chem . 2004 Jun; 279(31):32225-32. PMID: 15169771
In both prokaryotic and eukaryotic organisms, nucleoside diphosphate kinase is a multifunctional protein, with well defined functions in ribo- and deoxyribonucleoside triphosphate biosynthesis and more recently described functions in genetic...