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Rahul Raman

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Articles 79
Citations 3022
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Recent Articles
1.
Davis E, Raman R, Byrne S, Ghanegolmohammadi F, Mathur C, Begley U, et al.
bioRxiv . 2025 Feb; PMID: 39974974
Arginine, glutamic acid and selenocysteine based codon bias has been shown to regulate the translation of specific mRNAs for proteins that participate in stress responses, cell cycle and transcriptional regulation....
2.
Flores S, Loomba R, Mastropietro C, Cheung E, Amula V, Radman M, et al.
Pediatr Cardiol . 2025 Jan; PMID: 39792249
Data on outcomes of extracorporeal membrane oxygenation (ECMO) are limited in patients with pulmonary atresia intact ventricular septum (PAIVS). The objective of this study was to describe the use of...
3.
Puente B, Mastropietro C, Flores S, Cheung E, Amula V, Radman M, et al.
Pediatr Cardiol . 2024 Jun; PMID: 38842558
Data comparing surgical systemic-to-pulmonary artery shunt and patent ductus arteriosus (PDA) stent as the initial palliation procedure for patients with pulmonary atresia with intact ventricular septum (PA-IVS) are limited. We...
4.
Clark T, Subramanian V, Jayaraman A, Fitzpatrick E, Gopal R, Pentakota N, et al.
Commun Chem . 2023 Nov; 6(1):244. PMID: 37945793
The application of machine learning (ML) models to optimize antibody affinity to an antigen is gaining prominence. Unfortunately, the small and biased nature of the publicly available antibody-antigen interaction datasets...
5.
Miller N, Clark T, Raman R, Sasisekharan R
Front Mol Biosci . 2023 Mar; 10:1112738. PMID: 36895805
Defining predictors of antigen-binding affinity of antibodies is valuable for engineering therapeutic antibodies with high binding affinity to their targets. However, this task is challenging owing to the huge diversity...
6.
Cheung E, Mastropietro C, Flores S, Amula V, Radman M, Kwiatkowski D, et al.
Ann Thorac Surg . 2022 Sep; 115(6):1470-1477. PMID: 36070807
Background: Multicenter contemporary data describing short-term outcomes after initial interventions of neonates with pulmonary atresia with intact ventricular septum (PA-IVS) are limited. This multicenter study describes characteristics and outcomes of...
7.
Miller N, Raman R, Clark T, Sasisekharan R
Front Immunol . 2022 Jul; 13:904609. PMID: 35784339
The dynamic interplay between virus and host plays out across many interacting surfaces as virus and host evolve continually in response to one another. In particular, epitope-paratope interactions (EPIs) between...
8.
Iliopoulos I, Mastropietro C, Flores S, Cheung E, Amula V, Radman M, et al.
Pediatr Cardiol . 2022 Jun; 45(4):847-857. PMID: 35751685
Contemporary multicenter data regarding midterm outcomes for neonates with pulmonary atresia with intact ventricular septum are lacking. We sought to describe outcomes in a contemporary multicenter cohort, determine factors associated...
9.
Miller N, Clark T, Raman R, Sasisekharan R
bioRxiv . 2022 Mar; PMID: 35262083
The SARS-CoV-2 Omicron sub-variants BA.1 and BA.2 have become the dominant variants worldwide due to enhanced transmissibility and immune evasion. In response to the rise of BA.1 and BA.2, two...
10.
Miller N, Clark T, Raman R, Sasisekharan R
Cell Rep Med . 2022 Mar; 3(2):100527. PMID: 35233548
The Omicron variant features enhanced transmissibility and antibody escape. Here, we describe the Omicron receptor-binding domain (RBD) mutational landscape using amino acid interaction (AAI) networks, which are well suited for...