Philip D Blood
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Explore the profile of Philip D Blood including associated specialties, affiliations and a list of published articles.
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13
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4520
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Recent Articles
1.
Borner K, Blood P, Silverstein J, Ruffalo M, Satija R, Teichmann S, et al.
Nat Methods
. 2025 Mar;
PMID: 40082611
The Human BioMolecular Atlas Program (HuBMAP) aims to construct a 3D Human Reference Atlas (HRA) of the healthy adult body. Experts from 20+ consortia collaborate to develop a Common Coordinate...
2.
Borner K, Blood P, Silverstein J, Ruffalo M, Satija R, Teichmann S, et al.
bioRxiv
. 2024 Jun;
PMID: 38826261
The Human BioMolecular Atlas Program (HuBMAP) aims to construct a reference 3D structural, cellular, and molecular atlas of the healthy adult human body. The HuBMAP Data Portal (https://portal.hubmapconsortium.org) serves experimental...
3.
Guerrero F, Ghaffari N, Bendele K, Metz R, Dickens C, Blood P, et al.
Data Brief
. 2021 Mar;
35:106852.
PMID: 33644273
Ticks from the genus have enormous global economic impact as ectoparasites of cattle. and are known to harbor infectious pathogens such as , and . Having reference quality genomes of...
4.
Guerrero F, Bendele K, Ghaffari N, Guhlin J, Gedye K, Lawrence K, et al.
Data Brief
. 2019 Oct;
27:104602.
PMID: 31656838
The longhorned tick, , feeds upon a wide range of bird and mammalian hosts. Mammalian hosts include cattle, deer, sheep, goats, humans, and horses. This tick is known to transmit...
5.
Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Droge J, et al.
Nat Methods
. 2017 Oct;
14(11):1063-1071.
PMID: 28967888
Methods for assembly, taxonomic profiling and binning are key to interpreting metagenome data, but a lack of consensus about benchmarking complicates performance assessment. The Critical Assessment of Metagenome Interpretation (CAMI)...
6.
Chandran U, Medvedeva O, Barmada M, Blood P, Chakka A, Luthra S, et al.
PLoS One
. 2016 Oct;
11(10):e0165395.
PMID: 27788220
Background: The Cancer Genome Atlas Project (TCGA) is a National Cancer Institute effort to profile at least 500 cases of 20 different tumor types using genomic platforms and to make...
7.
Ghaffari N, Sanchez-Flores A, Doan R, Garcia-Orozco K, Chen P, Ochoa-Leyva A, et al.
Sci Rep
. 2014 Nov;
4:7081.
PMID: 25420880
We present a new transcriptome assembly of the Pacific whiteleg shrimp (Litopenaeus vannamei), the species most farmed for human consumption. Its functional annotation, a substantial improvement over previous ones, is...
8.
Couger M, Pipes L, Squina F, Prade R, Siepel A, Palermo R, et al.
Concurr Comput
. 2014 Oct;
26(13):2157-2166.
PMID: 25294974
A variety of extremely challenging biological sequence analyses were conducted on the XSEDE large shared memory resource Blacklight, using current bioinformatics tools and encompassing a wide range of scientific applications....
9.
Leduc R, Vaughn M, Fonner J, Sullivan M, Williams J, Blood P, et al.
J Am Med Inform Assoc
. 2013 Aug;
21(2):195-9.
PMID: 23964072
In the USA, the national cyberinfrastructure refers to a system of research supercomputer and other IT facilities and the high speed networks that connect them. These resources have been heavily...
10.
Haas B, Papanicolaou A, Yassour M, Grabherr M, Blood P, Bowden J, et al.
Nat Protoc
. 2013 Jul;
8(8):1494-512.
PMID: 23845962
De novo assembly of RNA-seq data enables researchers to study transcriptomes without the need for a genome sequence; this approach can be usefully applied, for instance, in research on 'non-model...