Pedro Mendes
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Explore the profile of Pedro Mendes including associated specialties, affiliations and a list of published articles.
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104
Citations
5614
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Recent Articles
1.
Masison J, Mendes P
PLoS Comput Biol
. 2025 Mar;
21(3):e1012374.
PMID: 40053535
Intestinal mucosal block is the transient reduction in iron absorption ability of intestinal epithelial cells (enterocytes) in response to previous iron exposures that occur at the cell scale. The block...
2.
Sauro H, Agmon E, Blinov M, Gennari J, Hellerstein J, Heydarabadipour A, et al.
ArXiv
. 2025 Mar;
PMID: 40034129
Guidelines for managing scientific data have been established under the FAIR principles requiring that data be Findable, Accessible, Interoperable, and Reusable. In many scientific disciplines, especially computational biology, both data...
3.
Mendes P
Front Cell Dev Biol
. 2023 Jun;
11:1201673.
PMID: 37346177
The issue of reproducibility of computational models and the related FAIR principles (findable, accessible, interoperable, and reusable) are examined in a specific test case. I analyze a computational model of...
4.
Mendes P
ArXiv
. 2023 May;
PMID: 37131876
The issue of reproducibility of computational models and the related FAIR principles (findable, accessible, interoperable, and reusable) are examined in a specific test case. I analyze a computational model of...
5.
Archambault L, Koshy-Chenthittayil S, Thompson A, Dongari-Bagtzoglou A, Laubenbacher R, Mendes P
mSphere
. 2023 Mar;
8(2):e0065622.
PMID: 36942961
As common commensals residing on mucosal tissues, species are known to promote health, while some Streptococcus species act to enhance the pathogenicity of other organisms in those environments. In this...
6.
Archambault L, Koshy-Chenthittayil S, Thompson A, Dongari-Bagtzoglou A, Laubenbacher R, Mendes P
mSphere
. 2023 Mar;
8(2):e0064822.
PMID: 36942960
No abstract available.
7.
Masison J, Mendes P
PLoS One
. 2023 Feb;
18(2):e0281401.
PMID: 36745660
Computational models can be created more efficiently by composing them from smaller, well-defined sub-models that represent specific cellular structures that appear often in different contexts. Cellular iron metabolism is a...
8.
Koshy-Chenthittayil S, Mendes P, Laubenbacher R
Lett Biomath
. 2023 Jan;
8(1):167-178.
PMID: 36590333
Optimization and control are important objectives across biology and biomedicine, and mathematical models are a key enabling technology. This paper reports a computational study of model-based multi-objective optimization in the...
9.
Sousa C, Mendes P, Brazao A
Arch Bronconeumol
. 2022 Jun;
57(9):591.
PMID: 35698939
No abstract available.
10.
BioSimulators: a central registry of simulation engines and services for recommending specific tools
Shaikh B, Smith L, Vasilescu D, Marupilla G, Wilson M, Agmon E, et al.
Nucleic Acids Res
. 2022 May;
50(W1):W108-W114.
PMID: 35524558
Computational models have great potential to accelerate bioscience, bioengineering, and medicine. However, it remains challenging to reproduce and reuse simulations, in part, because the numerous formats and methods for simulating...