Paulo C T Souza
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Explore the profile of Paulo C T Souza including associated specialties, affiliations and a list of published articles.
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50
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1185
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Recent Articles
1.
Paloncyova M, Valerio M, Dos Santos R, Kuhrova P, Srejber M, cechova P, et al.
Mol Pharm
. 2025 Jan;
22(3):1110-1141.
PMID: 39879096
Lipid-mediated delivery of active pharmaceutical ingredients (API) opened new possibilities in advanced therapies. By encapsulating an API into a lipid nanocarrier (LNC), one can safely deliver APIs not soluble in...
2.
Systematic Approach to Parametrization of Disaccharides for the Martini 3 Coarse-Grained Force Field
Brandner A, Smith I, Marrink S, Souza P, Khalid S
J Chem Inf Model
. 2025 Jan;
65(3):1537-1548.
PMID: 39818849
Sugars are ubiquitous in biology; they occur in all kingdoms of life. Despite their prevalence, they have often been somewhat neglected in studies of structure-dynamics-function relationships of macromolecules to which...
3.
Chung Y, Yim C, Pereira G, Son S, Kjolbye L, Mazurkiewicz L, et al.
J Cell Biol
. 2024 Nov;
223(12).
PMID: 39565596
Secretory proteins are critically dependent on the correct processing of their signal sequence by the signal peptidase complex (SPC). This step, which is essential for the proper folding and localization...
4.
Bartocci A, Grazzi A, Awad N, Corringer P, Souza P, Cecchini M
Nat Commun
. 2024 Oct;
15(1):9040.
PMID: 39426952
Glycine receptors (GlyR) are regulated by small-molecule binding at several allosteric sites. Cannabinoids like tetrahydrocannabinol (THC) and N-arachidonyl-ethanol-amide (AEA) potentiate the GlyR response but their mechanism of action is not...
5.
Pedersen K, Borges-Araujo L, Stange A, Souza P, Marrink S, Schiott B
J Chem Theory Comput
. 2024 Sep;
PMID: 39235392
Coarse-grained molecular dynamics simulations enable the modeling of increasingly complex systems at millisecond timescales. The transferable coarse-grained force field Martini 3 has shown great promise in modeling a wide range...
6.
Pereira G, Alessandri R, Dominguez M, Araya-Osorio R, Grunewald L, Borges-Araujo L, et al.
J Chem Theory Comput
. 2024 Jun;
20(13):5763-5773.
PMID: 38924075
Coarse-grained (CG) molecular dynamics (MD) simulations have grown in applicability over the years. The recently released version of the Martini CG force field (Martini 3) has been successfully applied to...
7.
Borges-Araujo L, Pereira G, Valerio M, Souza P
Biochim Biophys Acta Proteins Proteom
. 2024 Apr;
1872(4):141014.
PMID: 38670324
Coarse-grained (CG) protein models have become indispensable tools for studying many biological protein details, from conformational dynamics to the organization of protein macro-complexes, and even the interaction of proteins with...
8.
Diamanti E, Souza P, Setyawati I, Bousis S, Monjas L, Swier L, et al.
Commun Biol
. 2024 Jan;
7(1):70.
PMID: 38195913
No abstract available.
9.
Koukos P, Dehghani-Ghahnaviyeh S, Velez-Vega C, Manchester J, Tieleman D, Duca J, et al.
J Chem Theory Comput
. 2023 Nov;
19(23):8901-8918.
PMID: 38019969
Protein lipidations are vital co/post-translational modifications that tether lipid tails to specific protein amino acids, allowing them to anchor to biological membranes, switch their subcellular localization, and modulate association with...
10.
Diamanti E, Souza P, Setyawati I, Bousis S, Monjas L, Swier L, et al.
Commun Biol
. 2023 Nov;
6(1):1182.
PMID: 37985798
The energy-coupling factor (ECF) transporters are a family of transmembrane proteins involved in the uptake of vitamins in a wide range of bacteria. Inhibition of the activity of these proteins...