Nicole Redaschi
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Explore the profile of Nicole Redaschi including associated specialties, affiliations and a list of published articles.
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Articles
33
Citations
6863
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Recent Articles
1.
Lai P, Coudert E, Aimo L, Axelsen K, Breuza L, de Castro E, et al.
Sci Data
. 2024 Sep;
11(1):982.
PMID: 39251610
Expert curation is essential to capture knowledge of enzyme functions from the scientific literature in FAIR open knowledgebases but cannot keep pace with the rate of new discoveries and new...
2.
Lai P, Coudert E, Aimo L, Axelsen K, Breuza L, de Castro E, et al.
ArXiv
. 2024 Jun;
PMID: 38903736
Expert curation is essential to capture knowledge of enzyme functions from the scientific literature in FAIR open knowledgebases but cannot keep pace with the rate of new discoveries and new...
3.
Coudert E, Gehant S, de Castro E, Pozzato M, Baratin D, Neto T, et al.
Bioinformatics
. 2022 Dec;
39(1).
PMID: 36484697
Motivation: To provide high quality, computationally tractable annotation of binding sites for biologically relevant (cognate) ligands in UniProtKB using the chemical ontology ChEBI (Chemical Entities of Biological Interest), to better...
4.
Le Mercier P, Bolleman J, de Castro E, Gasteiger E, Bansal P, Auchincloss A, et al.
Database (Oxford)
. 2022 Apr;
2022.
PMID: 35411389
Database Url: www.swissbiopics.org.
5.
Bansal P, Morgat A, Axelsen K, Muthukrishnan V, Coudert E, Aimo L, et al.
Nucleic Acids Res
. 2021 Nov;
50(D1):D693-D700.
PMID: 34755880
Rhea (https://www.rhea-db.org) is an expert-curated knowledgebase of biochemical reactions based on the chemical ontology ChEBI (Chemical Entities of Biological Interest) (https://www.ebi.ac.uk/chebi). In this paper, we describe a number of key...
6.
Feuermann M, Boutet E, Morgat A, Axelsen K, Bansal P, Bolleman J, et al.
Metabolites
. 2021 Jan;
11(1).
PMID: 33445429
The UniProt Knowledgebase UniProtKB is a comprehensive, high-quality, and freely accessible resource of protein sequences and functional annotation that covers genomes and proteomes from tens of thousands of taxa, including...
7.
Hufsky F, Lamkiewicz K, Almeida A, Aouacheria A, Arighi C, Bateman A, et al.
Brief Bioinform
. 2020 Nov;
22(2):642-663.
PMID: 33147627
SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) is a novel virus of the family Coronaviridae. The virus causes the infectious disease COVID-19. The biology of coronaviruses has been studied for...
8.
Bolleman J, de Castro E, Baratin D, Gehant S, Cuche B, Auchincloss A, et al.
Gigascience
. 2020 Feb;
9(2).
PMID: 32034905
Background: Genome and proteome annotation pipelines are generally custom built and not easily reusable by other groups. This leads to duplication of effort, increased costs, and suboptimal annotation quality. One...
9.
Drysdale R, Cook C, Petryszak R, Baillie-Gerritsen V, Barlow M, Gasteiger E, et al.
Bioinformatics
. 2020 Jan;
36(8):2636-2642.
PMID: 31950984
Supplementary data are available at Bioinformatics online.
10.
Morgat A, Lombardot T, Coudert E, Axelsen K, Neto T, Gehant S, et al.
Bioinformatics
. 2019 Nov;
36(6):1896-1901.
PMID: 31688925
Motivation: To provide high quality computationally tractable enzyme annotation in UniProtKB using Rhea, a comprehensive expert-curated knowledgebase of biochemical reactions which describes reaction participants using the ChEBI (Chemical Entities of...