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Nathan T Weeks

Explore the profile of Nathan T Weeks including associated specialties, affiliations and a list of published articles. Areas
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Articles 9
Citations 488
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Recent Articles
1.
Cannon S, Lee H, Weeks N, Berendzen J
Bioinformatics . 2024 Aug; 40(9). PMID: 39180716
Summary: Identification of allelic or corresponding genes (pan-genes) within a species or genus is important for discovery of biologically significant genetic conservation and variation. Similarly, identification of orthologs (gene families)...
2.
Redsun S, Hokin S, Cameron C, Cleary A, Berendzen J, Dash S, et al.
Methods Mol Biol . 2022 Jan; 2443:81-100. PMID: 35037201
In this chapter, we introduce the main components of the Legume Information System ( https://legumeinfo.org ) and several associated resources. Additionally, we provide an example of their use by exploring...
3.
Brown A, Conners S, Huang W, Wilkey A, Grant D, Weeks N, et al.
Nucleic Acids Res . 2020 Dec; 49(D1):D1496-D1501. PMID: 33264401
SoyBase, a USDA genetic and genomics database, holds professionally curated soybean genetic and genomic data, which is integrated and made accessible to researchers and breeders. The site holds several reference...
4.
Bertioli D, Jenkins J, Clevenger J, Dudchenko O, Gao D, Seijo G, et al.
Nat Genet . 2019 May; 51(5):877-884. PMID: 31043755
Like many other crops, the cultivated peanut (Arachis hypogaea L.) is of hybrid origin and has a polyploid genome that contains essentially complete sets of chromosomes from two ancestral species....
5.
Brown A, Campbell J, Assefa T, Grant D, Nelson R, Weeks N, et al.
PLoS Comput Biol . 2018 Dec; 14(12):e1006472. PMID: 30589835
As sequencing prices drop, genomic data accumulates-seemingly at a steadily increasing pace. Most genomic data potentially have value beyond the initial purpose-but only if shared with the scientific community. This,...
6.
Belamkar V, Farmer A, Weeks N, Kalberer S, Blackmon W, Cannon S
Sci Rep . 2016 Oct; 6:34908. PMID: 27721469
For species with potential as new crops, rapid improvement may be facilitated by new genomic methods. Apios (Apios americana Medik.), once a staple food source of Native American Indians, produces...
7.
Dash S, Campbell J, Cannon E, Cleary A, Huang W, Kalberer S, et al.
Nucleic Acids Res . 2015 Nov; 44(D1):D1181-8. PMID: 26546515
Legume Information System (LIS), at http://legumeinfo.org, is a genomic data portal (GDP) for the legume family. LIS provides access to genetic and genomic information for major crop and model legumes....
8.
Belamkar V, Weeks N, Bharti A, Farmer A, Graham M, Cannon S
BMC Genomics . 2014 Nov; 15:950. PMID: 25362847
Background: The homeodomain leucine zipper (HD-Zip) transcription factor family is one of the largest plant specific superfamilies, and includes genes with roles in modulation of plant growth and response to...
9.
Kudapa H, Bharti A, Cannon S, Farmer A, Mulaosmanovic B, Kramer R, et al.
Mol Plant . 2012 Jan; 5(5):1020-8. PMID: 22241453
A comprehensive transcriptome assembly for pigeonpea has been developed by analyzing 128.9 million short Illumina GA IIx single end reads, 2.19 million single end FLX/454 reads, and 18 353 Sanger...