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Md Hossain Shuvo

Explore the profile of Md Hossain Shuvo including associated specialties, affiliations and a list of published articles. Areas
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Articles 12
Citations 54
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Recent Articles
1.
Shuvo M, Bhattacharya D
Comput Struct Biotechnol J . 2025 Jan; 27:160-170. PMID: 39850657
Quality estimation of the predicted interaction interface of protein complex structural models is not only important for complex model evaluation and selection but also useful for protein-protein docking. Despite recent...
2.
Roche R, Moussad B, Shuvo M, Tarafder S, Bhattacharya D
Nucleic Acids Res . 2024 Jan; 52(5):e27. PMID: 38281252
Protein language models (pLMs) trained on a large corpus of protein sequences have shown unprecedented scalability and broad generalizability in a wide range of predictive modeling tasks, but their power...
3.
Roche R, Moussad B, Shuvo M, Tarafder S, Bhattacharya D
bioRxiv . 2023 Sep; PMID: 37745556
Protein language models (pLMs) trained on a large corpus of protein sequences have shown unprecedented scalability and broad generalizability in a wide range of predictive modeling tasks, but their power...
4.
Roche R, Moussad B, Shuvo M, Bhattacharya D
PLoS Comput Biol . 2023 Aug; 19(8):e1011435. PMID: 37651442
Artificial intelligence-powered protein structure prediction methods have led to a paradigm-shift in computational structural biology, yet contemporary approaches for predicting the interfacial residues (i.e., sites) of protein-protein interaction (PPI) still...
5.
Shuvo M, Karim M, Bhattacharya D
J Mol Biol . 2023 Jun; 435(14):168057. PMID: 37356909
The remarkable recent advances in protein structure prediction have enabled computational modeling of protein structures with considerably higher accuracy than ever before. While state-of-the-art structure prediction methods provide self-assessment confidence...
6.
Shuvo M, Karim M, Roche R, Bhattacharya D
Bioinform Adv . 2023 Jun; 3(1):vbad070. PMID: 37351310
Motivation: Accurate modeling of protein-protein interaction interface is essential for high-quality protein complex structure prediction. Existing approaches for estimating the quality of a predicted protein complex structural model utilize only...
7.
Bhattacharya S, Roche R, Shuvo M, Moussad B, Bhattacharya D
Methods Mol Biol . 2023 Mar; 2627:41-59. PMID: 36959441
The ability to successfully predict the three-dimensional structure of a protein from its amino acid sequence has made considerable progress in the recent past. The progress is propelled by the...
8.
Shuvo M, Karim M, Roche R, Bhattacharya D
bioRxiv . 2023 Feb; PMID: 36824789
Accurate modeling of protein-protein interaction interface is essential for high-quality protein complex structure prediction. Existing approaches for estimating the quality of a predicted protein complex structural model utilize only the...
9.
Roche R, Bhattacharya S, Shuvo M, Bhattacharya D
Proteins . 2022 Jun; 90(12):2023-2034. PMID: 35751651
Protein contact maps have proven to be a valuable tool in the deep learning revolution of protein structure prediction, ushering in the recent breakthrough by AlphaFold2. However, self-assessment of the...
10.
Bhattacharya S, Roche R, Shuvo M, Bhattacharya D
Front Mol Biosci . 2021 May; 8:643752. PMID: 34046429
Sequence-based protein homology detection has emerged as one of the most sensitive and accurate approaches to protein structure prediction. Despite the success, homology detection remains very challenging for weakly homologous...