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Maurits J J Dijkstra

Explore the profile of Maurits J J Dijkstra including associated specialties, affiliations and a list of published articles. Areas
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Articles 4
Citations 23
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Recent Articles
1.
Dijkstra M, van der Ploeg A, Feenstra K, Fokkink W, Abeln S, Heringa J
Bioinformatics . 2019 Aug; 35(24):5315-5317. PMID: 31368486
Summary: PRALINE 2 is a toolkit for custom multiple sequence alignment workflows. It can be used to incorporate sequence annotations, such as secondary structure or (DNA) motifs, into the alignment...
2.
Lelieveld S, Schutte J, Dijkstra M, Bawono P, Kinston S, Gottgens B, et al.
Nucleic Acids Res . 2016 Jan; 44(8):e72. PMID: 26721389
Eukaryotic gene expression is regulated by transcription factors (TFs) binding to promoter as well as distal enhancers. TFs recognize short, but specific binding sites (TFBSs) that are located within the...
3.
Kukic P, Kannan A, Dijkstra M, Abeln S, Camilloni C, Vendruscolo M
PLoS Comput Biol . 2015 Oct; 11(10):e1004435. PMID: 26505754
It has been recently shown that the coarse-graining of the structures of polypeptide chains as self-avoiding tubes can provide an effective representation of the conformational space of proteins. In order...
4.
van den Broek E, Dijkstra M, Krijgsman O, Sie D, Haan J, Traets J, et al.
PLoS One . 2015 Sep; 10(9):e0138141. PMID: 26375816
Background: Cancer is caused by somatic DNA alterations such as gene point mutations, DNA copy number aberrations (CNA) and structural variants (SVs). Genome-wide analyses of SVs in large sample series...