Matthew L Speir
Overview
Explore the profile of Matthew L Speir including associated specialties, affiliations and a list of published articles.
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Articles
19
Citations
3144
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0
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Recent Articles
1.
Perez G, Barber G, Benet-Pages A, Casper J, Clawson H, Diekhans M, et al.
Nucleic Acids Res
. 2024 Oct;
53(D1):D1243-D1249.
PMID: 39460617
The UCSC Genome Browser (https://genome.ucsc.edu) is a widely utilized web-based tool for visualization and analysis of genomic data, encompassing over 4000 assemblies from diverse organisms. Since its release in 2001,...
2.
Raney B, Barber G, Benet-Pages A, Casper J, Clawson H, Cline M, et al.
Nucleic Acids Res
. 2023 Nov;
52(D1):D1082-D1088.
PMID: 37953330
The UCSC Genome Browser (https://genome.ucsc.edu) is a web-based genomic visualization and analysis tool that serves data to over 7,000 distinct users per day worldwide. It provides annotation data on thousands...
3.
Clawson H, Lee B, Raney B, Barber G, Casper J, Diekhans M, et al.
Genome Biol
. 2023 Oct;
24(1):217.
PMID: 37784172
Interactive graphical genome browsers are essential tools in genomics, but they do not contain all the recent genome assemblies. We create Genome Archive (GenArk) collection of UCSC Genome Browsers from...
4.
Clawson H, Lee B, Raney B, Barber G, Casper J, Diekhans M, et al.
Res Sq
. 2023 Apr;
PMID: 37066427
Interactive graphical genome browsers are essential tools for biologists working with DNA sequences. Although tens of thousands of new genome assemblies have become available over the last decade, accessibility is...
5.
Nassar L, Barber G, Benet-Pages A, Casper J, Clawson H, Diekhans M, et al.
Nucleic Acids Res
. 2022 Nov;
51(D1):D1188-D1195.
PMID: 36420891
The UCSC Genome Browser (https://genome.ucsc.edu) is an omics data consolidator, graphical viewer, and general bioinformatics resource that continues to serve the community as it enters its 23rd year. This year...
6.
Lee B, Barber G, Benet-Pages A, Casper J, Clawson H, Diekhans M, et al.
Nucleic Acids Res
. 2021 Oct;
50(D1):D1115-D1122.
PMID: 34718705
The UCSC Genome Browser, https://genome.ucsc.edu, is a graphical viewer for exploring genome annotations. The website provides integrated tools for visualizing, comparing, analyzing, and sharing both publicly available and user-generated genomic...
7.
Speir M, Bhaduri A, Markov N, Moreno P, Nowakowski T, Papatheodorou I, et al.
Bioinformatics
. 2021 Jul;
37(23):4578-4580.
PMID: 34244710
Summary: As the use of single-cell technologies has grown, so has the need for tools to explore these large, complicated datasets. The UCSC Cell Browser is a tool that allows...
8.
Kathiriya I, Rao K, Iacono G, Devine W, Blair A, Hota S, et al.
Dev Cell
. 2020 Dec;
56(3):292-309.e9.
PMID: 33321106
Haploinsufficiency of transcriptional regulators causes human congenital heart disease (CHD); however, the underlying CHD gene regulatory network (GRN) imbalances are unknown. Here, we define transcriptional consequences of reduced dosage of...
9.
Gonzalez J, Zweig A, Speir M, Schmelter D, Rosenbloom K, Raney B, et al.
Nucleic Acids Res
. 2020 Nov;
49(D1):D1046-D1057.
PMID: 33221922
For more than two decades, the UCSC Genome Browser database (https://genome.ucsc.edu) has provided high-quality genomics data visualization and genome annotations to the research community. As the field of genomics grows...
10.
Lee C, Barber G, Casper J, Clawson H, Diekhans M, Gonzalez J, et al.
Nucleic Acids Res
. 2019 Nov;
48(D1):D756-D761.
PMID: 31691824
The University of California Santa Cruz Genome Browser website (https://genome.ucsc.edu) enters its 20th year of providing high-quality genomics data visualization and genome annotations to the research community. In the past...