Marten Boetzer
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Explore the profile of Marten Boetzer including associated specialties, affiliations and a list of published articles.
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9
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2772
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Recent Articles
1.
Avalos M, Boetzer M, Pirovano W, Arenas N, Douthwaite S, van Wezel G
Genome Announc
. 2018 May;
6(18).
PMID: 29724850
The chemically mutagenized strain AS19 was isolated on the basis of its enhanced sensitivity to different antibiotics, in particular to actinomycin. The strain was later modified to study rRNA modifications...
2.
Pirovano W, Boetzer M, Derks M, Smit S
Brief Bioinform
. 2015 Dec;
18(2):179-182.
PMID: 26655251
Genome sequences nowadays play a central role in molecular biology and bioinformatics. These sequences are shared with the scientific community through sequence databases. The sequence repositories of the International Nucleotide...
3.
Pirovano W, Miozzi L, Boetzer M, Pantaleo V
Front Microbiol
. 2015 Feb;
5:790.
PMID: 25674078
Over the past years deep sequencing experiments have opened novel doors to reconstruct viral populations in a high-throughput and cost-effective manner. Currently a substantial number of studies have been performed...
4.
Boetzer M, Pirovano W
BMC Bioinformatics
. 2014 Jun;
15:211.
PMID: 24950923
Background: The recent introduction of the Pacific Biosciences RS single molecule sequencing technology has opened new doors to scaffolding genome assemblies in a cost-effective manner. The long read sequence information...
5.
Vonk F, Casewell N, Henkel C, Heimberg A, Jansen H, McCleary R, et al.
Proc Natl Acad Sci U S A
. 2013 Dec;
110(51):20651-6.
PMID: 24297900
Snakes are limbless predators, and many species use venom to help overpower relatively large, agile prey. Snake venoms are complex protein mixtures encoded by several multilocus gene families that function...
6.
Henkel C, Dirks R, de Wijze D, Minegishi Y, Aoyama J, Jansen H, et al.
Gene
. 2012 Oct;
511(2):195-201.
PMID: 23026207
The Japanese eel is a much appreciated research object and very important for Asian aquaculture; however, its genomic resources are still limited. We have used a streamlined bioinformatics pipeline for...
7.
Boetzer M, Pirovano W
Genome Biol
. 2012 Jun;
13(6):R56.
PMID: 22731987
De novo assembly is a commonly used application of next-generation sequencing experiments. The ultimate goal is to puzzle millions of reads into one complete genome, although draft assemblies usually result...
8.
Boetzer M, Henkel C, Jansen H, Butler D, Pirovano W
Bioinformatics
. 2010 Dec;
27(4):578-9.
PMID: 21149342
De novo assembly tools play a main role in reconstructing genomes from next-generation sequencing (NGS) data and usually yield a number of contigs. Using paired-read sequencing data it is possible...
9.
Menezes R, Boetzer M, Sieswerda M, van Ommen G, Boer J
BMC Bioinformatics
. 2009 Jul;
10:203.
PMID: 19563656
Background: Genes that play an important role in tumorigenesis are expected to show association between DNA copy number and RNA expression. Optimal power to find such associations can only be...