Marina L Pridatchenko
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Explore the profile of Marina L Pridatchenko including associated specialties, affiliations and a list of published articles.
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10
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65
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Recent Articles
1.
Ivanov M, Bubis J, Gorshkov V, Tarasova I, Levitsky L, Lobas A, et al.
Anal Chem
. 2020 Feb;
92(6):4326-4333.
PMID: 32077687
Proteome characterization relies heavily on tandem mass spectrometry (MS/MS) and is thus associated with instrumentation complexity, lengthy analysis time, and limited duty cycle. It was always tempting to implement approaches...
2.
Karaseva M, Chukhontseva K, Lemeskina I, Pridatchenko M, Kostrov S, Demidyuk I
Sci Rep
. 2019 Oct;
9(1):14352.
PMID: 31586119
Protealysin, a metalloprotease of Serratia proteamaculans, is the prototype of a subgroup of the M4 peptidase family. Protealysin-like proteases (PLPs) are widely spread in bacteria but also occur in fungi...
3.
Levitsky L, Ivanov M, Lobas A, Bubis J, Tarasova I, Solovyeva E, et al.
J Proteome Res
. 2018 Apr;
17(7):2249-2255.
PMID: 29682971
We present an open-source, extensible search engine for shotgun proteomics. Implemented in Python programming language, IdentiPy shows competitive processing speed and sensitivity compared with the state-of-the-art search engines. It is...
4.
Ivanov M, Tarasova I, Levitsky L, Solovyeva E, Pridatchenko M, Lobas A, et al.
J Proteome Res
. 2017 Sep;
16(11):3989-3999.
PMID: 28905631
In this work, we present the results of evaluation of a workflow that employs a multienzyme digestion strategy for MS1-based protein identification in "shotgun" proteomic applications. In the proposed strategy,...
5.
Tarasova I, Lobas A, cernigoj U, Solovyeva E, Mahlberg B, Ivanov M, et al.
Electrophoresis
. 2016 Apr;
37(17-18):2322-7.
PMID: 27122488
Affinity depletion of abundant proteins such as HSA is an important stage in routine sample preparation prior to MS/MS analysis of biological samples with high range of concentrations. Due to...
6.
Tarasova I, Surin A, Fornelli L, Pridatchenko M, Suvorina M, Gorshkov M
Eur J Mass Spectrom (Chichester)
. 2015 Aug;
21(3):459-70.
PMID: 26307727
Coupling of motion of the ion clouds with close m/z values is a well-established phenomenon for ion- trapping mass analyzers. In Fourier transform ion cyclotron resonance mass spectrometry it is...
7.
Tarasova I, Goloborodko A, Perlova T, Pridatchenko M, Gorshkov A, Evreinov V, et al.
Anal Chem
. 2015 May;
87(13):6562-9.
PMID: 26023813
The theory of critical chromatography for biomacromolecules (BioLCCC) describes polypeptide retention in reversed-phase HPLC using the basic principles of statistical thermodynamics. However, whether this theory correctly depicts a variety of...
8.
Ivanov M, Levitsky L, Lobas A, Panic T, Laskay U, Mitulovic G, et al.
J Proteome Res
. 2014 Feb;
13(4):1911-20.
PMID: 24571493
Data-dependent tandem mass spectrometry (MS/MS) is one of the main techniques for protein identification in shotgun proteomics. In a typical LC-MS/MS workflow, peptide product ion mass spectra (MS/MS spectra) are...
9.
Pridatchenko M, Perlova T, Hamidane H, Goloborodko A, Tarasova I, Gorshkov A, et al.
Anal Bioanal Chem
. 2011 Sep;
402(8):2521-9.
PMID: 21901462
The amino acid sequence determines the individual protein three-dimensional structure and its functioning in an organism. Therefore, "reading" a protein sequence and determining its changes due to mutations or post-translational...
10.
Perlova T, Goloborodko A, Margolin Y, Pridatchenko M, Tarasova I, Gorshkov A, et al.
Proteomics
. 2010 Sep;
10(19):3458-68.
PMID: 20815086
LC combined with MS/MS analysis of complex mixtures of protein digests is a reliable and sensitive method for characterization of protein phosphorylation. Peptide retention times (RTs) measured during an LC-MS/MS...