Manesh Shah
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Explore the profile of Manesh Shah including associated specialties, affiliations and a list of published articles.
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46
Citations
1991
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Recent Articles
1.
Sullivan K, Miller J, Townsend A, Morgan M, Lane M, Pavicic M, et al.
bioRxiv
. 2024 Aug;
PMID: 39091782
While the proliferation of data-driven omics technologies has continued to accelerate, methods of identifying relationships among large-scale changes from omics experiments have stagnated. It is therefore imperative to develop methods...
2.
Amos B, Pook V, Prates E, Stork J, Shah M, Jacobson D, et al.
J Agric Food Chem
. 2024 Jan;
72(6):3171-3179.
PMID: 38291808
Herbicide-resistant weeds are increasingly a problem in crop fields when exposed to similar chemistry over time. To avoid future yield losses, identifying herbicidal chemistry needs to be accelerated. We screened...
3.
Cope K, Prates E, Miller J, Demerdash O, Shah M, Kainer D, et al.
Comput Struct Biotechnol J
. 2023 Feb;
21:1122-1139.
PMID: 36789259
For plants, distinguishing between mutualistic and pathogenic microbes is a matter of survival. All microbes contain microbe-associated molecular patterns (MAMPs) that are perceived by plant pattern recognition receptors (PRRs). Lysin...
4.
Prates E, Garvin M, Pavicic M, Jones P, Shah M, Demerdash O, et al.
Mol Biol Evol
. 2020 Sep;
38(2):702-715.
PMID: 32941612
Despite SARS-CoV and SARS-CoV-2 being equipped with highly similar protein arsenals, the corresponding zoonoses have spread among humans at extremely different rates. The specific characteristics of these viruses that led...
5.
Jones P, Weighill D, Shah M, Climer S, Schmutz J, Sreedasyam A, et al.
Methods Mol Biol
. 2020 Jul;
2096:197-215.
PMID: 32720156
We demonstrate a selection of network and machine learning techniques useful in the analysis of complex datasets, including 2-way similarity networks, Markov clustering, enrichment statistical networks, FCROS differential analysis, and...
6.
Furches A, Kainer D, Weighill D, Large A, Jones P, Walker A, et al.
Front Plant Sci
. 2019 Oct;
10:1249.
PMID: 31649710
Understanding the regulatory network controlling cell wall biosynthesis is of great interest in , both because of its status as a model woody perennial and its importance for lignocellulosic products....
7.
Weighill D, Macaya-Sanz D, DiFazio S, Joubert W, Shah M, Schmutz J, et al.
Front Genet
. 2019 Jun;
10:487.
PMID: 31214244
Various 'omics data types have been generated for , each providing a layer of information which can be represented as a density signal across a chromosome. We make use of...
8.
Weighill D, Jones P, Bleker C, Ranjan P, Shah M, Zhao N, et al.
Front Genet
. 2019 May;
10:417.
PMID: 31134130
Various patterns of multi-phenotype associations (MPAs) exist in the results of Genome Wide Association Studies (GWAS) involving different topologies of single nucleotide polymorphism (SNP)-phenotype associations. These can provide interesting information...
9.
Cortes L, Vainauskas S, Dai N, McClung C, Shah M, Benner J, et al.
Proteomics
. 2014 Sep;
14(21-22):2471-84.
PMID: 25262930
Glycosylphosphatidylinositol-anchored proteins (GPI-APs) are an important class of glycoproteins that are tethered to the surface of mammalian cells via the lipid GPI. GPI-APs have been implicated in many important cellular...
10.
Schleicher T, VerBerkmoes N, Shah M, Nyholm S
Mol Cell Proteomics
. 2014 Jul;
13(10):2673-86.
PMID: 25038065
The squid Euprymna scolopes and the luminescent bacterium Vibrio fischeri form a highly specific beneficial light organ symbiosis. Not only does the host have to select V. fischeri from the...