Kami Ahmad
Overview
Explore the profile of Kami Ahmad including associated specialties, affiliations and a list of published articles.
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61
Citations
4654
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Recent Articles
1.
Khyzha N, Ahmad K, Henikoff S
Mol Cell
. 2025 Mar;
PMID: 40073862
Nuclear compartments are membrane-less regions enriched in functionally related molecules. RNA is a major component of many nuclear compartments, but the identity and dynamics of transcripts within nuclear compartments are...
2.
Henikoff S, Zheng Y, Paranal R, Xu Y, Greene J, Henikoff J, et al.
Science
. 2025 Feb;
387(6735):737-743.
PMID: 39946483
Genome-wide hypertranscription is common in human cancer and predicts poor prognosis. To understand how hypertranscription might drive cancer, we applied our formalin-fixed paraffin-embedded (FFPE)-cleavage under targeted accessible chromatin method for...
3.
Janssens D, Duran M, Otto D, Wu W, Xu Y, Kirkey D, et al.
Nat Commun
. 2024 Oct;
15(1):9341.
PMID: 39472576
Chromosomal translocations involving the mixed-lineage leukemia (MLL) locus generate potent oncogenic fusion proteins (oncoproteins) that disrupt regulation of developmental gene expression. By profiling the oncoprotein-target sites of 36 broadly representative...
4.
Ahmad K, Brahma S, Henikoff S
Mol Cell
. 2024 Apr;
84(10):1818.
PMID: 38604173
No abstract available.
5.
Henikoff S, Zheng Y, Paranal R, Xu Y, Greene J, Henikoff J, et al.
bioRxiv
. 2024 Apr;
PMID: 38559075
Genome-wide hypertranscription is common in human cancer and predicts poor prognosis. To understand how hypertranscription might drive cancer, we applied our FFPE-CUTAC method for mapping RNA Polymerase II (RNAPII) genome-wide...
6.
Janssens D, Duran M, Otto D, Wu W, Xu Y, Kirkey D, et al.
bioRxiv
. 2024 Jan;
PMID: 38234854
Chromosomal translocations involving the ( ) locus generate potent oncogenic fusion proteins (oncoproteins) that disrupt regulation of developmental gene expression. By profiling the oncoprotein-target sites of 36 broadly representative -rearranged...
7.
Anderson J, Henikoff S, Ahmad K
Elife
. 2023 Nov;
12.
PMID: 38032818
Spermatogenesis in the male germline proceeds through a unique transcriptional program controlled both by germline-specific transcription factors and by testis-specific versions of core transcriptional machinery. This program includes the activation...
8.
Ahmad K, Brahma S, Henikoff S
Mol Cell
. 2023 Nov;
84(2):194-201.
PMID: 38016477
In eukaryotic genomes, transcriptional machinery and nucleosomes compete for binding to DNA sequences; thus, a crucial aspect of gene regulatory element function is to modulate chromatin accessibility for transcription factor...
9.
Janssens D, Greene J, Wu S, Codomo C, Minot S, Furlan S, et al.
Nat Protoc
. 2023 Nov;
19(1):83-112.
PMID: 37935964
Cleavage under targets and tagmentation (CUT&Tag) is an antibody-directed in situ chromatin profiling strategy that is rapidly replacing immune precipitation-based methods, such as chromatin immunoprecipitation-sequencing. The efficiency of the method...
10.
Anderson J, Henikoff S, Ahmad K
bioRxiv
. 2023 Oct;
PMID: 37873332
Spermatogenesis in the Drosophila male germline proceeds through a unique transcriptional program controlled both by germline-specific transcription factors and by testis-specific versions of core transcriptional machinery. This program includes the...