Josh D Neufeld
Overview
Explore the profile of Josh D Neufeld including associated specialties, affiliations and a list of published articles.
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115
Citations
4694
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Recent Articles
1.
Sidhu H, Engel K, Ford S, Keech P, Behazin M, Binns W, et al.
Appl Environ Microbiol
. 2025 Feb;
:e0195024.
PMID: 39998254
The multi-national Materials Corrosion Test (MaCoTe), being conducted at the Grimsel Test Site in Switzerland, assesses the stability of bentonite as it may be utilized within deep geological repositories (DGRs),...
2.
Lakshminarasimman N, McKnight M, Neufeld J, Parker W
Bioresour Technol
. 2025 Feb;
423:132207.
PMID: 39929443
This study examined biofilm thickness, density, and microbial composition in a full-scale MABR treating municipal wastewater, focusing on their spatial and operational variability. The MABR cassette arrangement created a thickness...
3.
Ford S, Slater G, Engel K, Warr O, Lollar G, Brady A, et al.
Commun Earth Environ
. 2025 Jan;
5(1):795.
PMID: 39742000
Characterizing deep subsurface microbial communities informs our understanding of Earth's biogeochemistry as well as the search for life beyond the Earth. Here we characterized microbial communities within the Kidd Creek...
4.
McKnight M, Neufeld J
Appl Environ Microbiol
. 2024 Jun;
90(7):e0010424.
PMID: 38899882
Importance: Nitrification is a crucial process that converts toxic ammonia waste into less harmful nitrate that occurs in aquarium biofilters. Prior research found that ammonia-oxidizing archaea (AOA) were dominant over...
5.
Nonparametric richness estimators Chao1 and ACE must not be used with amplicon sequence variant data
Deng Y, Umbach A, Neufeld J
ISME J
. 2024 Jun;
18(1).
PMID: 38869966
No abstract available.
6.
Beaver R, Neufeld J
ISME J
. 2024 May;
18(1).
PMID: 38780093
The terrestrial subsurface hosts microbial communities that, collectively, are predicted to comprise as many microbial cells as global surface soils. Although initially thought to be associated with deposited organic matter,...
7.
Virgin T, Sonthiphand P, Coyotzi S, Hall M, Venkiteswaran J, Elgood R, et al.
Can J Microbiol
. 2024 May;
70(7):289-302.
PMID: 38747604
The Grand River watershed is the largest catchment in southern Ontario. The river's northern and southern sections are influenced by agriculture, whereas central regions receive wastewater effluent and urban runoff....
8.
AnnoView enables large-scale analysis, comparison, and visualization of microbial gene neighborhoods
Wei X, Tan H, Lobb B, Zhen W, Wu Z, Parks D, et al.
Brief Bioinform
. 2024 May;
25(3).
PMID: 38747283
The analysis and comparison of gene neighborhoods is a powerful approach for exploring microbial genome structure, function, and evolution. Although numerous tools exist for genome visualization and comparison, genome exploration...
9.
Ospino M, Engel K, Ruiz-Navas S, Binns W, Doxey A, Neufeld J
ISME Commun
. 2024 Mar;
4(1):ycae024.
PMID: 38500705
Combining multiple displacement amplification (MDA) with metagenomics enables the analysis of samples with extremely low DNA concentrations, making them suitable for high-throughput sequencing. Although amplification bias and nonspecific amplification have...
10.
Reis P, Tsuji J, Weiblen C, Schiff S, Scott M, Stein L, et al.
ISME J
. 2024 Mar;
18(1).
PMID: 38470309
Methanotrophic bacteria mitigate emissions of the potent greenhouse gas methane (CH4) from a variety of anthropogenic and natural sources, including freshwater lakes, which are large sources of CH4 on a...