Jonathan M Monk
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Explore the profile of Jonathan M Monk including associated specialties, affiliations and a list of published articles.
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76
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2579
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Recent Articles
1.
Chauhan S, Ardalani O, Hyun J, Monk J, Phaneuf P, Palsson B
mSphere
. 2025 Jan;
10(1):e0053224.
PMID: 39745367
Importance: The comprehensive analysis of the pangenome of presented in this study marks a significant advancement in understanding bacterial genetic diversity. By employing machine learning techniques to analyze 2,377 complete...
2.
Metabolic network analysis of pre-ASD newborns and 5-year-old children with autism spectrum disorder
Lingampelly S, Naviaux J, Heuer L, Monk J, Li K, Wang L, et al.
Commun Biol
. 2024 May;
7(1):536.
PMID: 38729981
Classical metabolomic and new metabolic network methods were used to study the developmental features of autism spectrum disorder (ASD) in newborns (n = 205) and 5-year-old children (n = 53)....
3.
Cooper H, Vezina B, Hawkey J, Passet V, Lopez-Fernandez S, Monk J, et al.
Microb Genom
. 2024 Feb;
10(2).
PMID: 38376382
The species complex (KpSC) is a major source of nosocomial infections globally with high rates of resistance to antimicrobials. Consequently, there is growing interest in understanding virulence factors and their...
4.
Pan L, Naviaux J, Wang L, Li K, Monk J, Lingampelly S, et al.
Transl Psychiatry
. 2023 Dec;
13(1):393.
PMID: 38097555
Peripheral blood metabolomics was used to gain chemical insight into the biology of treatment-refractory Major Depressive Disorder with suicidal ideation, and to identify individualized differences for personalized care. The study...
5.
Hyun J, Monk J, Szubin R, Hefner Y, Palsson B
Nat Commun
. 2023 Nov;
14(1):7690.
PMID: 38001096
Surveillance programs for managing antimicrobial resistance (AMR) have yielded thousands of genomes suited for data-driven mechanism discovery. We present a workflow integrating pangenomics, gene annotation, and machine learning to identify...
6.
Vezina B, Watts S, Hawkey J, Cooper H, Judd L, Jenney A, et al.
Elife
. 2023 Oct;
12.
PMID: 37815531
Metabolic capacity can vary substantially within a bacterial species, leading to ecological niche separation, as well as differences in virulence and antimicrobial susceptibility. Genome-scale metabolic models are useful tools for...
7.
Anugula S, Li Z, Li Y, Hendriksen A, Christensen P, Wang L, et al.
Heliyon
. 2023 Jul;
9(6):e17392.
PMID: 37484291
Replication stress, caused by deficiency, is associated with mitochondrial dysfunction, and metabolic stress. However, the overall metabolic alterations and possible interventions to rescue the deficits due to loss remain unclear....
8.
Kumaraswamy M, Coady A, Szubin R, Martin T, Palsson B, Nizet V, et al.
Curr Res Microb Sci
. 2023 Jan;
4:100180.
PMID: 36685102
Comprehensive whole genome sequencing (WGS) with hybrid assembly of a multi-drug resistant (MDR) (CA) isolate causing cerebral abscess was performed using Illumina paired end and Oxford Nanopore long read technologies....
9.
van t Hof M, Mohite O, Monk J, Weber T, Palsson B, Sommer M
BMC Bioinformatics
. 2022 Dec;
23(1):566.
PMID: 36585633
Background: Escherichia coli Nissle 1917 (EcN) is a probiotic bacterium used to treat various gastrointestinal diseases. EcN is increasingly being used as a chassis for the engineering of advanced microbiome...
10.
Li K, Naviaux J, Lingampelly S, Wang L, Monk J, Taylor C, et al.
Sci Total Environ
. 2022 Dec;
865:161222.
PMID: 36584956
First started in 1931, the Continuous Plankton Recorder (CPR) Survey is the longest-running and most geographically extensive marine plankton sampling program in the world. This pilot study investigates the feasibility...