Jean M Davidson
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Explore the profile of Jean M Davidson including associated specialties, affiliations and a list of published articles.
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33
Citations
2148
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Recent Articles
1.
Lee A, Daniels B, Hemstrom W, Lopez C, Kagaya Y, Kihara D, et al.
Mol Ecol
. 2024 Aug;
:e17511.
PMID: 39215560
Signals of natural selection can be quickly eroded in high gene flow systems, curtailing efforts to understand how and when genetic adaptation occurs in the ocean. This long-standing, unresolved topic...
2.
Khdhiri M, Thomas E, de Smet C, Chandar P, Chandrakumar I, Davidson J, et al.
BMC Bioinformatics
. 2024 Aug;
25(1):280.
PMID: 39192191
Background: Commonly used approaches for genomic investigation of bacterial outbreaks, including SNP and gene-by-gene approaches, are limited by the requirement for background genomes and curated allele schemes, respectively. As a...
3.
Daniels B, Nurge J, de Smet C, Sleeper O, White C, Davidson J, et al.
Microbiol Spectr
. 2024 Feb;
:e0351423.
PMID: 38334378
Microbiomes have gained significant attention in ecological research, owing to their diverse interactions and essential roles within different organismal ecosystems. Microorganisms, such as bacteria, archaea, and viruses, have profound impact...
4.
Daniels B, Nurge J, Sleeper O, Lee A, Lopez C, Christie M, et al.
PeerJ
. 2023 Dec;
11:e16510.
PMID: 38077446
Next-generation sequencing technologies, such as Nanopore MinION, Illumina Hiseq and Novaseq, and PacBio Sequel II, hold immense potential for advancing genomic research on non-model organisms, including the vast majority of...
5.
Sumner J, Andrasz C, Johnson C, Wax S, Anderson P, Keeling E, et al.
G3 (Bethesda)
. 2023 Aug;
13(10).
PMID: 37555394
Ascidians have the potential to reveal fundamental biological insights related to coloniality, regeneration, immune function, and the evolution of these traits. This study implements a hybrid assembly technique to produce...
6.
Hitz B, Lee J, Jolanki O, Kagda M, Graham K, Sud P, et al.
Res Sq
. 2023 Jul;
PMID: 37503119
The Encyclopedia of DNA elements (ENCODE) project is a collaborative effort to create a comprehensive catalog of functional elements in the human genome. The current database comprises more than 19000...
7.
Hitz B, Jin-Wook L, Jolanki O, Kagda M, Graham K, Sud P, et al.
bioRxiv
. 2023 Apr;
PMID: 37066421
The Encyclopedia of DNA elements (ENCODE) project is a collaborative effort to create a comprehensive catalog of functional elements in the human genome. The current database comprises more than 19000...
8.
Anderson P, Gadgil R, Johnson W, Schwab E, Davidson J
Comput Biol Med
. 2021 Sep;
138:104850.
PMID: 34536702
Deep learning neural networks have improved performance in many cancer informatics problems, including breast cancer subtype classification. However, many networks experience underspecificationwheremultiplecombinationsofparametersachievesimilarperformance, bothin training and validation. Additionally, certain parameter combinations...
9.
Gorkin D, Barozzi I, Zhao Y, Zhang Y, Huang H, Lee A, et al.
Nature
. 2021 Jan;
589(7842):E4.
PMID: 33398137
No abstract available.
10.
Gorkin D, Barozzi I, Zhao Y, Zhang Y, Huang H, Lee A, et al.
Nature
. 2020 Oct;
586(7831):E31.
PMID: 33037424
An amendment to this paper has been published and can be accessed via a link at the top of the paper.