Jakub Sebera
Overview
Explore the profile of Jakub Sebera including associated specialties, affiliations and a list of published articles.
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32
Citations
184
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Recent Articles
21.
Kratochvilova I, Golan M, Vala M, Sperova M, Weiter M, Pav O, et al.
J Phys Chem B
. 2014 May;
118(20):5374-81.
PMID: 24780102
DNA-Hg complexes may play an important role in sensing DNA defects or in detecting the presence of Hg in the environment. A fundamental way of characterizing DNA-Hg complexes is to...
22.
Yamaguchi H, Sebera J, Kondo J, Oda S, Komuro T, Kawamura T, et al.
Nucleic Acids Res
. 2013 Dec;
42(6):4094-9.
PMID: 24371287
We have determined the three-dimensional (3D) structure of DNA duplex that includes tandem Hg(II)-mediated T-T base pairs (thymine-Hg(II)-thymine, T-Hg(II)-T) with NMR spectroscopy in solution. This is the first 3D structure...
23.
Kratochvilova I, Vala M, Weiter M, Sperova M, Schneider B, Pav O, et al.
Biophys Chem
. 2013 Aug;
180-181:127-34.
PMID: 23968861
Oligonucleotides conduct electric charge via various mechanisms and their characterization and understanding is a very important and complicated task. In this work, experimental (temperature dependent steady state fluorescence spectroscopy, time-resolved...
24.
Sebera J, Burda J, Straka M, Ono A, Kojima C, Tanaka Y, et al.
Chemistry
. 2013 Jun;
19(30):9884-94.
PMID: 23766024
A reaction mechanism that describes the substitution of two imino protons in a thymine:thymine (T:T) mismatched DNA base pair with a Hg(II) ion, which results in the formation of a...
25.
Sebera J, Trantirek L, Tanaka Y, Sychrovsky V
J Phys Chem B
. 2012 Sep;
116(41):12535-44.
PMID: 22989268
A mechanistic pathway for cleavage of the N-glycosidic bond of 8-oxo-2'-deoxyguanosine (oxoG) catalyzed with the human 8-oxoguanine glycosylase 1 DNA repair protein (hOGG1) is proposed in this theoretical study. The...
26.
Nozar J, Nespurek S, Sebera J
J Mol Model
. 2011 May;
18(2):623-9.
PMID: 21559965
This paper presents a theoretical approach to the evaluation of polaron binding energy in polymers. Quantum chemical calculations were performed on a model polymer, poly[methyl(phenyl)silylene], employing the B3LYP and CAM-B3LYP...
27.
Trojanek A, Langmaier J, Sebera J, Zalis S, Barbe J, Girault H, et al.
Chem Commun (Camb)
. 2011 Apr;
47(19):5446-8.
PMID: 21468406
The catalytic effect of tetraphenylporphyrin on the oxygen reduction with ferrocene in 1,2-dichloroethane can be finely tuned by varying the molar ratio of the acid to the catalyst present in...
28.
Kubat P, Sebera J, Zalis S, Langmaier J, Fuciman M, Polivka T, et al.
Phys Chem Chem Phys
. 2011 Mar;
13(15):6947-54.
PMID: 21399801
Transient absorption spectroscopy, cyclic voltammetry, and DFT calculations were used to describe charge transfer processes in a series of 5,10,15,20-tetrakis(N-methylpyridinium-n-yl) porphyrins (TMPyPn, n = 4,3,2) and TMPyPn/p-sulfonatocalix[m]arene (clxm, m =...
29.
Nemec H, Kratochvilova I, Kuzel P, Sebera J, Kochalska A, Nozar J, et al.
Phys Chem Chem Phys
. 2011 Feb;
13(7):2850-6.
PMID: 21305068
Time-resolved terahertz spectroscopy and combination of quantum chemistry modeling and molecular dynamics simulations were used for the determination of charge carrier mobility in poly[methyl(phenyl)silylene]. Using time-resolved THz spectroscopy we established...
30.
Kratochvilova I, Todorciuc T, Kral K, Nemec H, Buncek M, Sebera J, et al.
J Phys Chem B
. 2010 Apr;
114(15):5196-205.
PMID: 20353252
We combined various experimental (scanning tunneling microscopy and Raman spectroscopy) and theoretical (density functional theory and molecular dynamics) approaches to study the relationships between the base-pairing patterns and the charge...