Jakub Sebera
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Explore the profile of Jakub Sebera including associated specialties, affiliations and a list of published articles.
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32
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Recent Articles
11.
Sebera J, Dubankova A, Sychrovsky V, Ruzek D, Boura E, Nencka R
Sci Rep
. 2018 Jul;
8(1):11132.
PMID: 30042483
Zika virus is a global health threat due to significantly elevated risk of fetus malformations in infected pregnant women. Currently, neither an effective therapy nor a prophylactic vaccination is available...
12.
Fukal J, Pav O, Budesinsky M, Sebera J, Sychrovsky V
Phys Chem Chem Phys
. 2017 Nov;
19(47):31830-31841.
PMID: 29171602
A benchmark for structural interpretation of the P NMR shift and the J NMR spin-spin coupling in the phosphate group was obtained by means of theoretical calculations and NMR measurements...
13.
Kratochvilova I, Golan M, Pomeisl K, Richter J, Sedlakova S, Sebera J, et al.
RSC Adv
. 2017 Sep;
7(1):352-360.
PMID: 28936355
In this work the physico-chemical properties of selected cryoprotectants (antifreeze protein TrxA-AFP752, trehalose and dimethyl sulfoxide) were correlated with their impact on the constitution of ice and influence on frozen/thawed...
14.
Sebera J, Hattori Y, Sato D, reha D, Nencka R, Kohno T, et al.
Nucleic Acids Res
. 2017 Mar;
45(9):5231-5242.
PMID: 28334993
The excision of 8-oxoguanine (oxoG) by the human 8-oxoguanine DNA glycosylase 1 (hOGG1) base-excision repair enzyme was studied by using the QM/MM (M06-2X/6-31G(d,p):OPLS2005) calculation method and nuclear magnetic resonance (NMR)...
15.
Dairaku T, Furuita K, Sato H, Sebera J, Nakashima K, Kondo J, et al.
Chemistry
. 2016 Aug;
22(37):13028-31.
PMID: 27505707
The structure of an Ag(I) -mediated cytosine-cytosine base pair, C-Ag(I) -C, was determined with NMR spectroscopy in solution. The observation of 1-bond (15) N-(109) Ag J-coupling ((1) J((15) N,(109) Ag):...
16.
Vavrinska A, Zelinka J, Sebera J, Sychrovsky V, Fiala R, Boelens R, et al.
J Biomol NMR
. 2016 May;
65(1):49.
PMID: 27215413
No abstract available.
17.
Dracinsky M, Sala M, Klepetarova B, Sebera J, Fukal J, Holeckova V, et al.
J Phys Chem B
. 2016 Jan;
120(5):915-25.
PMID: 26727398
The (15)N NMR shifts of 9-ethyl-8-oxoguanine (OG) were calculated and measured in liquid DMSO and in crystal. The OG molecule is a model for oxidatively damaged 2'-deoxyguanosine that occurs owing...
18.
Vavrinska A, Zelinka J, Sebera J, Sychrovsky V, Fiala R, Boelens R, et al.
J Biomol NMR
. 2015 Dec;
64(1):53-62.
PMID: 26685997
Heteronuclear and homonuclear direct (D) and indirect (J) spin-spin interactions are important sources of structural information about nucleic acids (NAs). The Hamiltonians for the D and J interactions have the...
19.
Tanaka Y, Kondo J, Sychrovsky V, Sebera J, Dairaku T, Saneyoshi H, et al.
Chem Commun (Camb)
. 2015 Oct;
51(98):17343-60.
PMID: 26466090
Recently, metal-mediated base-pairs (metallo-base-pairs) have been studied extensively with the aim of exploring novel base-pairs; their structures, physicochemical properties, and applications have been studied. This trend has become more evident...
20.
Dairaku T, Furuita K, Sato H, Sebera J, Yamanaka D, Otaki H, et al.
Chem Commun (Camb)
. 2015 Apr;
51(40):8488-91.
PMID: 25891069
We have observed the 1-bond (199)Hg-(15)N J-coupling ((1)J((199)Hg,(15)N) = 1050 Hz) within the Hg(II)-mediated thymine-thymine base pair (T-Hg(II)-T). This strikingly large (1)J((199)Hg,(15)N) is the first one for canonical sp(2)-nitrogen atoms,...